ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.4.1

Subclass Accession number: 2235
Subclass: 2.4.1

PSSM

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 12.5 +/- 19.2
Average RMSD (Å) : 0.743 +/- 0.223

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	hXXXXX
(φψ)-conformation:	aalbaa

Pattern:	[aepqt]	x	[ALV]	[AET]	[GNRS]	[adegn]	x	[AEGQS]	[AGILPV]	[flmpv]	x	x	[KNRTY]
Conservation:	-0.441	-1.055	1.263	1.768	1.492	-0.743	-1.153	0.608	-0.609	-0.684	-0.608	-0.289	0.450

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1all_B_78	1all	B	98	110	AMLAGDPSILDER	HHHHT-SHHHHHH	aaaavbaaaaaaa
1h7e_A_193	1h7e	A	195	207	EQAESLEQLRLMN	HHHHT-TTHHHHH	aaaavbaaaaaaa
1hbn_B_299	1hbn	B	318	330	QGAARAAQGVSST	HHHHT-GGGHHHH	aaaalbaaaaaaa
1jbo_A_78	1jbo	A	98	110	CLVAGGTGPMDEY	HHHHTSSHHHHHH	aaaavbaaaaaaa
1jbo_B_78	1jbo	B	98	110	AILAGDSSVLDDR	HHHHTSSHHHHHH	aaaavbaaaaaaa
1q5n_A_65	1q5n	A	72	84	TGLAGNIAIPFVK	HHHHSSSHHHHHH	aaaavbaaaaaaa
1uuq_A_156	1uuq	A	156	168	PNVTNEWEAFMAK	HHHH--HHHHHHH	aaaalbaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	R - 79
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	R - 80
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	Y - 81
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	A - 83
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	C - 84
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	I - 85
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	R - 86
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	D - 87
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	L - 88
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	Y - 90
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	Y - 91
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	Y - 94
1all_B_78	1all	B	CYCPHYCOCYANOBILIN	R - 110
1jbo_A_78	1jbo	A	CYCPHYCOCYANOBILIN	E - 79
1jbo_A_78	1jbo	A	CYCPHYCOCYANOBILIN	G - 80
1jbo_B_78	1jbo	B	MENN-METHYL ASPARAGINE	R - 80
1jbo_A_78	1jbo	A	CYCPHYCOCYANOBILIN	K - 81
1jbo_B_78	1jbo	B	MENN-METHYL ASPARAGINE	M - 81
1jbo_B_78	1jbo	B	CYCPHYCOCYANOBILIN	M - 81
1jbo_A_78	1jbo	A	CYCPHYCOCYANOBILIN	K - 83
1jbo_A_78	1jbo	A	CYCPHYCOCYANOBILIN	A - 85
1jbo_B_78	1jbo	B	CYCPHYCOCYANOBILIN	L - 85
1jbo_A_78	1jbo	A	CYCPHYCOCYANOBILIN	I - 88
1jbo_B_78	1jbo	B	CYCPHYCOCYANOBILIN	M - 88
1jbo_B_78	1jbo	B	CYCPHYCOCYANOBILIN	I - 90
1jbo_B_78	1jbo	B	CYCPHYCOCYANOBILIN	I - 91
1jbo_A_78	1jbo	A	CYCPHYCOCYANOBILIN	R - 93
1jbo_A_78	1jbo	A	CYCPHYCOCYANOBILIN	M - 94
1jbo_A_78	1jbo	A	CYCPHYCOCYANOBILIN	Y - 110

Clusters included in this Subclass

CLUSTER: HH.3.122

CLUSTER: HH.4.141

CLUSTER: HH.5.252