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Information on SUBCLASS 2.5.1
Subclass Accession number: 2242
Subclass: 2.5.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 18.4 +/- 17.0
Average RMSD (Å) : 0.580 +/- 0.220

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXGp
(φψ)-conformation: aapbea
Pattern: [ailv][aegpqt]x[glmtv][amtv][egnrt][AG][denst][aest][agkqr][ekqty]x[ILMV]x
Conservation:0.204-0.781-0.925-0.8230.207-0.4262.869-0.4050.0230.041-0.261-0.4401.274-0.557
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1h2s_A_951h2s   A114127AGAMVPGIERYALFHHHH--STHHHHHHaaaabxeaaaaaaa
1hle_A_541hle   A6477IFLGTRGNTAAQVSHHHT--HHHHHHHHaaaaxbeaaaaaaa
1lj5_A_361lj5   A4659LQLTTGGETQQQIQHHHH--HHHHHHHHaaaaxbeaaaaaaa
1m93_A_201m93   A3043LYYGANGSTAEQLSHHHH--HHHHHHHHaaaaxbeaaaaaaa
1mtp_A_361mtp   A4659LAAGARATTRTELTHHHT--HHHHHHHHaaaabbeaaaaaaa
1n00_A_1381n00   A142155VAHHTTGDFHKLLLHHHH--HHHHHHHHaaaabbeaaaaaaa
1n7o_A_4711n7o   A485498IADMSEGETKQRLQHHHHS-HHHHHHHHaaaaxbeaaaaaaa
1un8_A_4131un8   A424437LTVVMGGSSGVLMSHHHHS-HHHHHHHHaaaabxeaaaaaaa
1v54_F_91v54   F922DEEQATGLEREVMLHHHH--HHHHHHHHaaaapbeaaaaaaa
1v9m_A_721v9m   A7285LPRLVTGEAREAVRHHHH--HHHHHHHHaaaabbeaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h2s_A_951h2s   A     RETRETINAL V - 108
1h2s_A_951h2s   A     RETRETINAL M - 109
1h2s_A_951h2s   A     RETRETINAL A - 111
1h2s_A_951h2s   A     RETRETINAL G - 112
1h2s_A_951h2s   A     RETRETINAL F - 113
1h2s_A_951h2s   A     RETRETINAL L - 126
1h2s_A_951h2s   A     RETRETINAL F - 127
1h2s_A_951h2s   A     RETRETINAL G - 130
1h2s_A_951h2s   A     RETRETINAL A - 131
1h2s_A_951h2s   A     RETRETINAL F - 134
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE L - 413
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE L - 416
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE F - 417
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE I - 420
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE L - 424
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE M - 428
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE M - 436
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE F - 439
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE F - 440
1v54_F_91v54   F     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE D - 9
1v54_F_91v54   F     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE Q - 12
1v54_F_91v54   F     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE A - 13
1v54_F_91v54   F     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE E - 17
1v9m_A_721v9m   A     GOLGLYCEROL R - 85
1v9m_A_721v9m   A     GOLGLYCEROL L - 89
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1un8_A_4131un8   A AC1MYY BINDING SITE FOR CHAIN AL - 413
1un8_A_4131un8   A AC1MYY BINDING SITE FOR CHAIN AI - 420
1un8_A_4131un8   A AC1MYY BINDING SITE FOR CHAIN AM - 436
1un8_A_4131un8   A AC1MYY BINDING SITE FOR CHAIN AF - 440

Clusters included in this Subclass
CLUSTER: HH.2.86
CLUSTER: HH.3.91