ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.10.1

Subclass Accession number: 2256
Subclass: 2.10.1

PSSM

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
EC : 2 (>50 %) 7 (>75 %)
SCOP : 46457 (>75 %) 46458 (>75 %) 46532 (>75 %)

Number of loops: 4

Average sequence ID (%) : 38.2 +/- 23.5
Average RMSD (Å) : 0.375 +/- 0.096

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 0-45

rho (°): 0-45

Consensus Sequence:	hhXGXp
(φψ)-conformation:	aaplaa

Pattern:	[GS]	[IPV]	[LMV]	[D]	[DE]	[RWY]	[CGLV]	[IL]	[AN]	[G]	x	[KRS]	[E]	[ITV]	[NY]	[NQRS]	[AST]
Conservation:	-0.020	-0.822	-0.151	2.002	0.713	-0.619	-1.503	0.234	-0.683	2.002	-0.722	-0.387	1.412	-0.467	0.161	-0.728	-0.422

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1all_B_105	1all	B	105	121	SILDERVLNGLKETYNS	HHHHHHTTTTHHHHHHH	aaaaaaaaxvaaaaaaa
1b8d_A_103	1b8d	A	103	119	GPVDEWGIAGSREVYRA	HHHHHHTTTTHHHHHHH	aaaaaaaapvaaaaaaa
1jbo_A_105	1jbo	A	105	121	GPMDEYLIAGLSEINST	HHHHHHTTTTHHHHHHH	aaaaaaaaxvaaaaaaa
1jbo_B_105	1jbo	B	105	121	SVLDDRCLNGLRETYQA	HHHHHHTTTTHHHHHHH	aaaaaaaaxvaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	R - 110
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	V - 111
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	L - 112
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	L - 115
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	T - 118
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	Y - 119
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	L - 122
1b8d_A_103	1b8d	A	PEBPHYCOERYTHROBILIN	W - 108
1b8d_A_103	1b8d	A	PEBPHYCOERYTHROBILIN	G - 109
1b8d_A_103	1b8d	A	PEBPHYCOERYTHROBILIN	V - 116
1b8d_A_103	1b8d	A	PEBPHYCOERYTHROBILIN	Y - 117
1jbo_A_105	1jbo	A	CYCPHYCOCYANOBILIN	Y - 110
1jbo_A_105	1jbo	A	CYCPHYCOCYANOBILIN	L - 111
1jbo_B_105	1jbo	B	CYCPHYCOCYANOBILIN	C - 111
1jbo_A_105	1jbo	A	CYCPHYCOCYANOBILIN	I - 118
1jbo_A_105	1jbo	A	CYCPHYCOCYANOBILIN	F - 122
1jbo_B_105	1jbo	B	MENN-METHYL ASPARAGINE	L - 122

Clusters included in this Subclass

CLUSTER: HH.3.169