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Information on SUBCLASS 3.6.2
Subclass Accession number: 226
Subclass: 3.6.2 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 12.9 +/- 13.6
Average RMSD (Å) : 1.008 +/- 0.171

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXGhpph
(φψ)-conformation: aagpabb
Pattern: [adeqrst]xx[aeknrst]x[afilvy][acfglm]xxx[gk][afgp][ADEKQST]x[AGLPVY]x
Conservation:0.168-0.592-0.898-0.006-0.545-0.146-0.501-0.204-0.566-0.5063.370-0.0990.7580.583-0.497-0.317
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aho_*_191aho   -2035AYCNEECTKLKGESGYHHHHHHHHHTT-SEEEaaaaaaaaaavxabbb
1b9h_A_391b9h   A4257SFEREFAAHHGAAHALHHHHHHHHHTT-SEEEaaaaaaaaaalxabbb
1by2_*_371by2   -3853TDASVVCRALGFENATHHHHHHHHHTT-S-EEaaaaaaaaaavbabba
1c0a_A_1951c0a   A195210QLFKQLLMMSGFDRYYHHHHHHHHHTT--EEEaaaaaaaaaavpabbb
1fit_*_521fit   -6479RVGTVVEKHFHGTSLTHHHHHHHHHTT-SEEEaaaaaaaaaalxabbb
1fp2_A_3211fp2   A322337EEWKKLFIEAGFQHYKHHHHHHHHHTT--EEEaaaaaaaaaavxabbb
1h7w_A_6471h7w   A651666MELSRKAEASGADALEHHHHHHHHHTT-SEEEaaaaaaaaaagpabbb
1jce_A_1081jce   A112127RAILDAGLEAGASKVFHHHHHHHHHTT-SEEEaaaaaaaaaagxabbb
1m6s_A_341m6s   A3853ELERLAAETFGKEAALHHHHHHHHHTT-SEEEaaaaaaaaaavbabbb
1m7x_A_2651m7x   A270285DQLVPYAKWMGFTHLEHHHHHHHHHTT-SEEEaaaaaaaaaavxabbb
1nvm_B_1721nvm   B178193TTSKAIEVIGGAAKGKHHHHHHHHTT--SSEEaaaaaaaaaavxabbb
1pv9_A_1571pv9   A162176AKVEYLMKMNGAEKP.HHHHHHHHHTT-SEE.aaaaaaaaaagxabx.
1ub0_A_1521ub0   A156171EEAAKALLALGPKAVLHHHHHHHHTTS-S-EEaaaaaaaaaagxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1by2_*_371by2   *     NAGN-ACETYL-D-GLUCOSAMINE L - 37
1by2_*_371by2   *     NAGN-ACETYL-D-GLUCOSAMINE S - 41
1by2_*_371by2   *     NAGN-ACETYL-D-GLUCOSAMINE R - 45
1by2_*_371by2   *     NAGN-ACETYL-D-GLUCOSAMINE E - 50
1by2_*_371by2   *     NAGN-ACETYL-D-GLUCOSAMINE N - 51
1by2_*_371by2   *     NAGN-ACETYL-D-GLUCOSAMINE A - 52
1c0a_A_1951c0a   A     AMOASPARTYL-ADENOSINE-5'-MONOPHOSPHATE Q - 195
1c0a_A_1951c0a   A     AMOASPARTYL-ADENOSINE-5'-MONOPHOSPHATE K - 198
1c0a_A_1951c0a   A     AMOASPARTYL-ADENOSINE-5'-MONOPHOSPHATE C - 215
1fit_*_521fit   *     MSESELENOMETHIONINE L - 58
1fit_*_521fit   *     MSESELENOMETHIONINE F - 59
1fit_*_521fit   *     FRUFRUCTOSE K - 71
1fit_*_521fit   *     FRUFRUCTOSE H - 72
1fit_*_521fit   *     FRUFRUCTOSE F - 73
1fit_*_521fit   *     FRUFRUCTOSE H - 74
1fit_*_521fit   *     MSESELENOMETHIONINE F - 80
1h7w_A_6471h7w   A     FMNFLAVIN MONONUCLEOTIDE E - 666
1h7w_A_6471h7w   A     FMNFLAVIN MONONUCLEOTIDE N - 668
1jce_A_1081jce   A     MSESELENOMETHIONINE I - 114
1jce_A_1081jce   A     MSESELENOMETHIONINE I - 129
1jce_A_1081jce   A     MSESELENOMETHIONINE E - 130
1nvm_B_1721nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 175

Clusters included in this Subclass
CLUSTER: HE.3.90
CLUSTER: HE.5.19
CLUSTER: HE.6.56