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Information on SUBCLASS 3.2.3
Subclass Accession number: 2277
Subclass: 3.2.3 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 19

Average sequence ID (%) : 15.3 +/- 16.3
Average RMSD (Å) : 0.700 +/- 0.240

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXchphX
(φψ)-conformation: aalppaa
Pattern: xx[dehknqrsty][adekqrst][acfiklt][DGKNS][filtv][DNPS][fgilmpt][aegnpqs]x[cfiltvy]x
Conservation:-1.014-0.718-0.192-0.167-0.2731.9900.3882.196-0.674-0.308-0.4980.035-0.764
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_1051a8i   -111123ATYQLGLDMEELEHHHHTT--HHHHHaaaaavbbaaaaa
1a9x_A_3061a9x   A311323ASKATGFPIAKVAHHHHHS--HHHHHaaaaavbxaaaaa
1all_A_1151all   A118130MYKSLGTPIEAIAHHHHHT--HHHHHaaaaavxxaaaaa
1all_B_1151all   B118130TYNSLGVPIGATVHHHHHT--HHHHHaaaaavxxaaaaa
1b8d_A_1131b8d   A116128VYRALNLPGSAYIHHHHTT--HHHHHaaaaalbxaaaaa
1cg5_B_821cg5   B8799KHQEIGVDTQNFKHHHHHT--THHHHaaaaagxxaaaaa
1fs7_A_4481fs7   A451463AQKLAKVDMEAFIHHHHTT--HHHHHaaaaalbxaaaaa
1fxx_A_3171fxx   A319331DADRLGINRQHCLHHHHHT--HHHHHaaaaavxxaaaaa
1jbo_A_1151jbo   A118130INSTFDLSPSWYIHHHHHT--HHHHHaaaaalbxaaaaa
1jbo_B_1151jbo   B118130TYQALGTPGSSVAHHHHHT--HHHHHaaaaavxxaaaaa
1k6k_A_381k6k   A4355ALEACSVDLVALRHHHHTT--HHHHHaaaaalxxaaaaa
1m1n_A_1551m1n   A155167PIGLIGDDIESVSHHHHHT--HHHHHaaaaavxbaaaaa
1nm2_A_261nm2   A3345WSDAIGLDLAHFGHHHHHTS-HHHHHaaaaavbxaaaaa
1o1y_A_1891o1y   A191203ELEKKKIDPRLLLHHHHTT--HHHHHaaaaalbxaaaaa
1ogl_A_1721ogl   A182194AAQDLDFNLVGYYHHHHTT--HHHHHaaaaalbxaaaaa
1p0k_A_3301p0k   A335347WLTERGVNTSSYSHHHHTT--SHHHHaaaaavxxaaaaa
1pfo_*_2001pfo   -203215LENSLGVDFNAVAHHHHT---HHHHHaaaaavxxaaaaa
1qtm_A_6261qtm   A630642RVFQEGRDIHTETHHHHTT--HHHHHaaaaalxbaaaaa
1uc8_A_2591uc8   A259271SVHTTGVDIPGEIHHHHH---HHHHHaaaaavbxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a9x_A_3061a9x   A     ADPADENOSINE-5'-DIPHOSPHATE R - 306
1a9x_A_3061a9x   A     MNMANGANESE (II) ION R - 306
1a9x_A_3061a9x   A     PO4PHOSPHATE ION R - 306
1a9x_A_3061a9x   A     PO4PHOSPHATE ION S - 307
1all_A_1151all   A     CYCPHYCOCYANOBILIN V - 115
1all_B_1151all   B     CYCPHYCOCYANOBILIN L - 115
1all_A_1151all   A     CYCPHYCOCYANOBILIN M - 118
1all_B_1151all   B     CYCPHYCOCYANOBILIN T - 118
1all_A_1151all   A     CYCPHYCOCYANOBILIN Y - 119
1all_A_1151all   A     CYCPHYCOCYANOBILIN L - 122
1all_A_1151all   A     CYCPHYCOCYANOBILIN T - 124
1all_B_1151all   B     CYCPHYCOCYANOBILIN V - 124
1all_A_1151all   A     CYCPHYCOCYANOBILIN P - 125
1all_B_1151all   B     CYCPHYCOCYANOBILIN I - 126
1all_A_1151all   A     CYCPHYCOCYANOBILIN A - 128
1all_A_1151all   A     CYCPHYCOCYANOBILIN I - 129
1all_B_1151all   B     CYCPHYCOCYANOBILIN T - 129
1all_A_1151all   A     CYCPHYCOCYANOBILIN G - 132
1all_B_1151all   B     CYCPHYCOCYANOBILIN A - 132
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN V - 116
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN Y - 117
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN L - 120
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN N - 121
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN L - 122
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN P - 123
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN A - 126
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN Y - 127
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN A - 130
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN T - 134
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN R - 135
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN R - 137
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 84
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE K - 87
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE H - 88
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE I - 91
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 93
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE D - 94
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE N - 97
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 98
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 101
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN I - 118
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN F - 122
1jbo_B_1151jbo   B     MENN-METHYL ASPARAGINE L - 122
1jbo_B_1151jbo   B     MENN-METHYL ASPARAGINE G - 123
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN L - 124
1jbo_B_1151jbo   B     MENN-METHYL ASPARAGINE T - 124
1jbo_B_1151jbo   B     MENN-METHYL ASPARAGINE P - 125
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN W - 128
1jbo_B_1151jbo   B     CYCPHYCOCYANOBILIN S - 128
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN Y - 129
1jbo_B_1151jbo   B     CYCPHYCOCYANOBILIN V - 129
1jbo_B_1151jbo   B     CYCPHYCOCYANOBILIN A - 144
1m1n_A_1551m1n   A     CLFFE(8)-S(7) CLUSTER P - 155
1o1y_A_1891o1y   A     MSESELENOMETHIONINE P - 199
1o1y_A_1891o1y   A     MSESELENOMETHIONINE L - 202
1o1y_A_1891o1y   A     MSESELENOMETHIONINE L - 203
1o1y_A_1891o1y   A     MSESELENOMETHIONINE A - 206
1o1y_A_1891o1y   A     MSESELENOMETHIONINE E - 209
1o1y_A_1891o1y   A     MSESELENOMETHIONINE E - 210
1o1y_A_1891o1y   A     MSESELENOMETHIONINE K - 211
1o1y_A_1891o1y   A     MSESELENOMETHIONINE L - 213
1o1y_A_1891o1y   A     MSESELENOMETHIONINE K - 214
1o1y_A_1891o1y   A     MSESELENOMETHIONINE L - 217
1o1y_A_1891o1y   A     MSESELENOMETHIONINE S - 219
1o1y_A_1891o1y   A     MSESELENOMETHIONINE L - 220
1o1y_A_1891o1y   A     MSESELENOMETHIONINE L - 221
1o1y_A_1891o1y   A     MSESELENOMETHIONINE E - 222
1qtm_A_6261qtm   A     TTPTHYMIDINE-5'-TRIPHOSPHATE H - 639

Clusters included in this Subclass
CLUSTER: HH.3.35
CLUSTER: HH.4.129
CLUSTER: HH.4.46
CLUSTER: HH.5.208
CLUSTER: HH.5.68