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Information on SUBCLASS 3.2.5
Subclass Accession number: 2279
Subclass: 3.2.5 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 46457 (>50 %)  46458 (>50 %)  46532 (>50 %)  
 Number of loops: 9

Average sequence ID (%) : 11.5 +/- 13.2
Average RMSD (Å) : 0.989 +/- 0.280

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: pXphpXp
(φψ)-conformation: aalppaa
Pattern: xxx[ailmv]x[AEKNST]x[GKNQR][flvy][DHNST][aegpqs][aekrst][ADEQ]x[agmv]x[AFILMT]xx[afgily]
Conservation:-0.746-0.967-0.1440.8340.0510.696-0.6870.8330.5111.129-0.683-0.1082.962-0.3610.177-0.4420.334-1.167-1.263-0.960
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b0n_A_761b0n   A82101VRDAMTSGVSKKQFREFLDYHHHHHHS---HHHHHHHHHHaaaaaaavxxaaaaaaaaaa
1eex_A_4531eex   A460479AQEIINKNRNGLEVVKALAQHHHHHHTT--HHHHHHHHHHaaaaaaalxxaaaaaaaaaa
1g2n_A_3531g2n   A353372SLKMRTLRVDQAEYVALKAIHHHHHHTT--HHHHHHHHHHaaaaaaalpbaaaaaaaaaa
1j77_A_1491j77   A157176VEHLNALNLTPEAEAEAIQGHHHHHHT---HHHHHHHHHHaaaaaaalxxaaaaaaaaaa
1mwv_A_4601mwv   A467486KAKVLASGLTVSQLVSTAWAHHHHHHTT--HHHHHHHHHHaaaaaaavpxaaaaaaaaaa
1nrl_A_3221nrl   A327346HYMLKKLQLHEEEYVLMQAIHHHHHHT---HHHHHHHHHHaaaaaaalxxaaaaaaaaaa
1ojq_A_91ojq   A1736NSLIKSAKYSSKDKMAIYNYHHHHHHH---HHHHHHHHHHaaaaaaalxxaaaaaaaaaa
1pk5_A_4411pk5   A454473VVRLRSLQFDQREFVCLKFLHHHHHHTT--HHHHHHHHHHaaaaaaavpbaaaaaaaaaa
1qs1_A_701qs1   A7897KEKEKEWKLTATEKGKMNNFHHHHHHH---HHHHHHHHHHaaaaaaavxxaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b0n_A_761b0n   A     ZNZINC ION K - 92
1b0n_A_761b0n   A     ZNZINC ION K - 93
1b0n_A_761b0n   A     ZNZINC ION Q - 94
1b0n_A_761b0n   A     ZNZINC ION E - 97
1j77_A_1491j77   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 153
1j77_A_1491j77   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 180
1j77_A_1491j77   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 181
1j77_A_1491j77   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 184
1nrl_A_3221nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER M - 323
1nrl_A_3221nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER L - 324
1nrl_A_3221nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER H - 327

Clusters included in this Subclass
CLUSTER: HH.3.159
CLUSTER: HH.4.59