Information on SUBCLASS 3.4.10 |
Subclass Accession number: 2318
Subclass: 3.4.10 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 3.2 +/- 4.5 Average RMSD (Å) : 0.700 +/- 0.173 Consensus geometry
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Consensus Sequence: | XpXpXXX |
(φψ)-conformation: | aapapaa |
Pattern: | [FHV] | x | [AEQ] | [EQT] | [STV] | [DQR] | x | [LTY] | x | x | x | x | [FWY] | x | [GIW] | [EFK] | x | x | [AR] | x | [EKR] |
Conservation: | -0.230 | -0.351 | 0.495 | 0.616 | 0.132 | 0.495 | -0.593 | -0.230 | 0.739 | -0.835 | -0.593 | -0.593 | 3.155 | -0.110 | -0.835 | -0.472 | -1.319 | -0.956 | 0.859 | -0.714 | 1.341 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1c1k_A_170 | 1c1k | A | 174 | 194 | HDEQTDNLVWNNYSIKLKAYR | HHHH---HHHHHHHHHHHHHH | aaaabapaaaaaaaaaaaaaa |
1h0o_A_150 | 1h0o | A | 150 | 170 | FSQEVQVTEARCFYGFQIAME | HHHH---HHHHHHHHHHHHHH | aaaaxaxaaaaaaaaaaaaaa |
1o8a_A_164 | 1o8a | A | 168 | 188 | VMATSRKYEDLLWAWEGWRDK | HHHH---HHHHHHHHHHHHHH | aaaaxabaaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1h0o_A_150 | 1h0o | A | COCOBALT (II) ION | Q - 166 |
1h0o_A_150 | 1h0o | A | COCOBALT (II) ION | E - 170 |
1h0o_A_150 | 1h0o | A | COCOBALT (II) ION | H - 173 |
1o8a_A_164 | 1o8a | A | NAGN-ACETYL-D-GLUCOSAMINE | W - 180 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h0o_A_150 | 1h0o | A | CO1CO BINDING SITE FOR CHAIN A | Q - 166 |
1h0o_A_150 | 1h0o | A | CO1CO BINDING SITE FOR CHAIN A | E - 170 |
1o8a_A_164 | 1o8a | A | CL1CL BINDING SITE FOR CHAIN A | R - 186 |
Clusters included in this Subclass |
CLUSTER: HH.2.190 |