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Information on SUBCLASS 3.5.1
Subclass Accession number: 2319
Subclass: 3.5.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 12.9 +/- 15.1
Average RMSD (Å) : 0.682 +/- 0.159

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 225-270
Consensus Sequence: XXXXpXh
(φψ)-conformation: aabapaa
Pattern: [acilvy][aefkl][aegqr]xx[dknpqs][dnqy]x[agikmv][dekqrst]x
Conservation:1.376-1.2020.431-1.318-0.7590.5081.811-0.5370.287-0.106-0.492
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a28_A_8381a28   A856866IGLRQKGVVSSHHTT--SHHHHaaaabapaaaa
1a6q_*_2471a6q   -257267RLEVTDDLEKVHHTT---HHHHaaaabaxaaaa
1cmi_A_151cmi   A2838ALEKYNIEKDIHHHH-SSHHHHaaaabaxaaaa
1eg7_A_12041eg7   A12081218CLCLASDLMDLHHHH-SSHHHHaaaaxabaaaa
1h4r_A_1051h4r   A105115AEEELVQEITQHHHH--SHHHHaaaaxaxaaaa
1h6t_A_441h6t   A4454IKQIFSDDAFAHHHH--SHHHHaaaabaxaaaa
1h6u_A_441h6u   A4454INVIFPDPALAHHHH--SHHHHaaaabwxaaaa
1hnn_A_1841hnn   A184194LEAVSPDLASFHHHH-SSHHHHaaaababaaaa
1iuq_A_3131iuq   A316326IAATHKNPEEVHHHTSSSHHHHaaaababaaaa
1mwm_A_2321mwm   A235245LKQRINDENKIHHHH-S-SHHHaaaababaaaa
1mx1_A_13961mx1   A14031413YLGGTDDTVKKHHTT---HHHHaaaabaxaaaa
1onr_A_491onr   A5969AKQQSNDRAQQHHHH-S-HHHHaaaabaxaaaa
1puo_A_1101puo   A117127VAQYKALPVVLHHTT---HHHHaaaabaxaaaa
1q16_A_1151q16   A124134AKALHSDPVEAHHTT-SSHHHHaaaabaxaaaa
1ryo_A_2091ryo   A210220IFENLANKADRHHHH--SHHHHaaaabaxaaaa
1v8a_A_2101v8a   A228238AYEEAKYPGSFHHHH--SHHHHaaaababaaaa
1v9m_A_1461v9m   A154164VLRETQDLARVHHTT---HHHHaaaabaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a28_A_8381a28   A     STRPROGESTERONE L - 887
1a28_A_8381a28   A     STRPROGESTERONE Y - 890
1a28_A_8381a28   A     STRPROGESTERONE C - 891
1a28_A_8381a28   A     STRPROGESTERONE L - 892
1a28_A_8381a28   A     STRPROGESTERONE T - 894
1a28_A_8381a28   A     STRPROGESTERONE F - 895
1hnn_A_1841hnn   A     SKF1,2,3,4-TETRAHYDRO-ISOQUINOLINE-7-SULFONIC ACID AMIDE E - 185
1hnn_A_1841hnn   A     SAHS-ADENOSYL-L-HOMOCYSTEINE A - 186
1hnn_A_1841hnn   A     SKF1,2,3,4-TETRAHYDRO-ISOQUINOLINE-7-SULFONIC ACID AMIDE A - 186
1hnn_A_1841hnn   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 187
1iuq_A_3131iuq   A     GOLGLYCEROL E - 328
1iuq_A_3131iuq   A     GOLGLYCEROL S - 331
1iuq_A_3131iuq   A     GOLGLYCEROL K - 332
1iuq_A_3131iuq   A     MSESELENOMETHIONINE F - 335
1iuq_A_3131iuq   A     GOLGLYCEROL F - 335
1iuq_A_3131iuq   A     MSESELENOMETHIONINE D - 336
1iuq_A_3131iuq   A     GOLGLYCEROL D - 336
1iuq_A_3131iuq   A     MSESELENOMETHIONINE S - 337
1iuq_A_3131iuq   A     MSESELENOMETHIONINE V - 338
1mx1_A_13961mx1   A     THATACRINE M - 1425
1v9m_A_1461v9m   A     GOLGLYCEROL P - 146
1v9m_A_1461v9m   A     GOLGLYCEROL R - 149
1v9m_A_1461v9m   A     GOLGLYCEROL D - 175

Clusters included in this Subclass
CLUSTER: HH.3.41
CLUSTER: HH.4.24
CLUSTER: HH.5.219
CLUSTER: HH.6.23