Logo
Information on SUBCLASS 3.6.9
Subclass Accession number: 2335
Subclass: 3.6.9 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 10.4 +/- 10.8
Average RMSD (Å) : 1.000 +/- 0.300

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXXpXX
(φψ)-conformation: aapabaa
Pattern: [AKR][AIK]x[GKT]xx[IK][DET]xxxx[K][AE]xx
Conservation:0.319-0.742-0.646-0.453-0.453-0.1640.0790.511-0.549-0.164-0.839-0.5493.3080.861-0.453-0.067
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aa7_A_901aa7   A101116RKLKREITFHGAKEISHHHTT--SHHHHHHHHaaaaaxabaaaaaaaa
1mqv_A_751mqv   A91106AAQGTIKDEASLKANIHHHHH--SHHHHHHHHaaaaaxabaaaaaaaa
2fok_A_412fok   A4156KIPTLVKESKIQKELVHHHHH--SHHHHHHHHaaaaabapaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 77
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 78
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 79
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 81
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 82
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 85
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 109
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 110
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 112
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 113
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 114
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 116
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 117
1mqv_A_751mqv   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 120
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1aa7_A_901aa7   A S1RNA-BINDING SITE.K - 95
1aa7_A_901aa7   A S1RNA-BINDING SITE.K - 98
1aa7_A_901aa7   A S1RNA-BINDING SITE.R - 101
1aa7_A_901aa7   A S1RNA-BINDING SITE.K - 102
1aa7_A_901aa7   A S1RNA-BINDING SITE.R - 105

Clusters included in this Subclass
CLUSTER: HH.4.186