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Information on SUBCLASS 3.9.1
Subclass Accession number: 2343
Subclass: 3.9.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004246 (>75 %)  GO:0008233 (>75 %)  GO:0008237 (>75 %)  GO:0008238 (>75 %)  GO:0008241 (>75 %)  
SCOP : 55485 (>75 %)  55486 (>75 %)  55505 (>75 %)  
 Number of loops: 10

Average sequence ID (%) : 12.7 +/- 14.3
Average RMSD (Å) : 0.740 +/- 0.178

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XpGhXXX
(φψ)-conformation: aagbpaa
Pattern: xx[afilmw][AFGLT]x[adkq]x[gk][iklmv][adps]xxx[agil]x
Conservation:-1.022-0.598-0.284-0.2210.161-0.015-0.1133.2630.3580.535-0.825-0.313-0.7220.055-0.259
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cpo_*_501cpo   -5569NAFLNHMGIANSVIEHHHHHHH-B-HHHHHaaaaaaavbxaaaaa
1ecm_A_491ecm   A6074ITLGKAHHLDAHYITHHHHHHHT--HHHHHaaaaaaavbxaaaaa
1f75_A_311f75   A3246GRWAKQKKMPRIKGHHHHHHHTT--HHHHHaaaaaaalbxaaaaa
1j3v_A_1601j3v   A183197LLALVKQGVSAEKALHHHHHHTT--HHHHHaaaaaaavxxaaaaa
1mpg_A_1661mpg   A166180PQALKALGMPLKRAEHHHHHHTTS-HHHHHaaaaaaagbxaaaaa
1n0u_A_6121n0u   A617631RIMADDYGWDVTDARHHHHHTT---HHHHHaaaaaaavxxaaaaa
1nvp_B_101nvp   B2640RDIFLDDGVDEQVLMHHHHHHHT--HHHHHaaaaaaavxpaaaaa
1o04_A_991o04   A104118ALETLDNGKPYVISYHHHHHHH---HHHHHaaaaaaagxpaaaaa
1q9i_A_4471q9i   A448462VKLGKMEGIDGKALTHHHHHHHTS-HHHHHaaaaaaavbpaaaaa
1ueh_A_281ueh   A2943GRWAKKQGKIRAFGHHHHHHHTT--HHHHHaaaaaaavbxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cpo_*_501cpo   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 53
1cpo_*_501cpo   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 57
1cpo_*_501cpo   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 61
1cpo_*_501cpo   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 63
1cpo_*_501cpo   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 67
1cpo_*_501cpo   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 68
1cpo_*_501cpo   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 71
1cpo_*_501cpo   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 72
1cpo_*_501cpo   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 75
1cpo_*_501cpo   *     NAGN-ACETYL-D-GLUCOSAMINE V - 82
1cpo_*_501cpo   *     NAGN-ACETYL-D-GLUCOSAMINE T - 83
1ecm_A_491ecm   A     TSA8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID I - 49
1ecm_A_491ecm   A     TSA8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID D - 50
1ecm_A_491ecm   A     TSA8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID R - 51
1ecm_A_491ecm   A     TSA8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID E - 52
1ecm_A_491ecm   A     TSA8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID L - 55
1ecm_A_491ecm   A     TSA8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID I - 80
1ecm_A_491ecm   A     TSA8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID I - 81
1ecm_A_491ecm   A     TSA8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID E - 82
1ecm_A_491ecm   A     TSA8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID S - 84
1ecm_A_491ecm   A     TSA8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID V - 85
1ecm_A_491ecm   A     TSA8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID Q - 88
1j3v_A_1601j3v   A     MSESELENOMETHIONINE A - 160
1j3v_A_1601j3v   A     MSESELENOMETHIONINE G - 161
1j3v_A_1601j3v   A     MSESELENOMETHIONINE H - 162
1j3v_A_1601j3v   A     MSESELENOMETHIONINE V - 164
1j3v_A_1601j3v   A     MSESELENOMETHIONINE K - 165
1j3v_A_1601j3v   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 165
1j3v_A_1601j3v   A     MSESELENOMETHIONINE A - 166
1j3v_A_1601j3v   A     MSESELENOMETHIONINE N - 168
1j3v_A_1601j3v   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE N - 169
1j3v_A_1601j3v   A     MSESELENOMETHIONINE A - 170
1j3v_A_1601j3v   A     MSESELENOMETHIONINE W - 177
1j3v_A_1601j3v   A     MSESELENOMETHIONINE V - 199
1o04_A_991o04   A     EDO1,2-ETHANEDIOL Y - 101
1o04_A_991o04   A     EDO1,2-ETHANEDIOL L - 108

Clusters included in this Subclass
CLUSTER: HH.3.88
CLUSTER: HH.4.70