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PDB code:

Information on SUBCLASS 4.4.1

Subclass Accession number: 2375 Subclass: 4.4.1 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 21 Average sequence ID (%) : 13.9 +/- 14.4 Average RMSD (Å) : 0.676 +/- 0.259 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d8c_A_632	1d8c	A	642	660	IANWLRHGILTKEQVQASL	HHHHHHTTSS-HHHHHHHH	aaaaaaavabbaaaaaaaa
1dj0_A_203	1dj0	A	210	228	SLMEVGAHNQPESWIAELL	HHHHHHTTSS-TTHHHHHH	aaaaaaavabxaaaaaaaa
1f14_A_207	1f14	A	218	236	AIRLYERGDASKEDIDTAM	HHHHHHTTSS-HHHHHHHH	aaaaaaavabxaaaaaaaa
1h16_A_280	1h16	A	287	305	IERDLKAGKITEQEAQEMV	HHHHHHTTSS-HHHHHHHH	aaaaaaavabxaaaaaaaa
1h6k_A_598	1h6k	A	605	623	VDKMIRTQIVDCAAVANWI	HHHHHHTTSS-HHHHHHHH	aaaaaaavabbaaaaaaaa
1ire_B_68	1ire	B	77	95	IHHGVRTGKIDLEELERRT	HHHHHHTT-S-HHHHHHHH	aaaaaaavabxaaaaaaaa
1is2_A_571	1is2	A	571	589	GGDFLEGSIITGAQLSQVN	HHHHHHTTSS-HHHHHHHH	aaaaaaalabxaaaaaaaa
1jj2_O_90	1jj2	O	105	123	LRELRDEGTLSSSQYRDLY	HHHHHHTTSS-HHHHHHHH	aaaaaaagabxaaaaaaaa
1k7w_A_37	1k7w	A	48	66	AKALEKAGILTKTELEKIL	HHHHHHTTSS-HHHHHHHH	aaaaaaavabxaaaaaaaa
1kek_A_560	1kek	A	565	583	TAFFKLAGVLPFEKAVDLL	HHHHHHSSSS-HHHHHHHH	aaaaaaavabxaaaaaaaa
1l6s_A_272	1l6s	A	278	296	IKFAALAGAIDEEKVVLES	HHHHHHTTSS-HHHHHHHH	aaaaaaavabxaaaaaaaa
1mla_*_93	1mla	-	96	114	YSALVCAGVIDFADAVRLV	HHHHHHTTSS-HHHHHHHH	aaaaaaavabxaaaaaaaa
1nh2_D_14	1nh2	D	23	41	LDTLISDGRIEASLAMRVL	HHHHHHTTSS-HHHHHHHH	aaaaaaavabbaaaaaaaa
1nm2_A_99	1nm2	A	101	119	ITAAVFAGVLDDTAALSLV	HHHHHHTTSS-HHHHHHHH	aaaaaaavabxaaaaaaaa
1nvp_D_10	1nvp	D	19	37	LDELIQSQQITPQLALQVL	HHHHHHTTSS-HHHHHHHH	aaaaaaalabxaaaaaaaa
1o9p_A_4	1o9p	A	7	25	LQRRIETGELSPNAAIAQS	HHHHHHTTSS-HHHHHHHH	aaaaaaavabxaaaaaaaa
1ohl_A_290	1ohl	A	296	314	LHAAAEKGVVDLKTIAFES	HHHHHHTTSS-HHHHHHHH	aaaaaaavabbaaaaaaaa
1paq_A_651	1paq	A	659	677	LVSLYDNDIIEEDVIYKWW	HHHHHHTTSS-HHHHHHHH	aaaaaaavabbaaaaaaaa
1qi9_A_465	1qi9	A	477	495	AFGRQMLGIHYRFDGIQGL	HHHHHHTTS--HHHHHHHH	aaaaaaagabbaaaaaaaa
1t2d_A_199	1t2d	A	199	217	LQEFINNKLISDAELEAIF	HHHHHHTTSS-HHHHHHHH	aaaaaaavabxaaaaaaaa
2ahj_B_72	2ahj	B	81	99	ATLMVEKGILTQDELESLA	HHHHHHTTSS-HHHHHHHH	aaaaaaavabbaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d8c_A_632	1d8c	A	MGMAGNESIUM ION	A - 633
1d8c_A_632	1d8c	A	GLVGLYOXYLIC ACID	A - 633
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	R - 636
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	I - 637
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	S - 638
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	Q - 640
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	H - 641
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	A - 643
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	N - 644
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	W - 645
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	R - 647
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	H - 648
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	A - 658
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	S - 659
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	L - 660
1d8c_A_632	1d8c	A	MSESELENOMETHIONINE	E - 661
1ire_B_68	1ire	B	CSD3-SULFINOALANINE	Y - 68
1jj2_O_90	1jj2	O	MGMAGNESIUM ION	S - 90
1jj2_O_90	1jj2	O	MGMAGNESIUM ION	K - 91
1l6s_A_272	1l6s	A	DSB4,7-DIOXOSEBACIC ACID	S - 272
1l6s_A_272	1l6s	A	DSB4,7-DIOXOSEBACIC ACID	G - 273
1ohl_A_290	1ohl	A	PBG3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL] PROPANOIC ACID	S - 290
1ohl_A_290	1ohl	A	PBG3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL] PROPANOIC ACID	G - 291
1paq_A_651	1paq	A	MSESELENOMETHIONINE	L - 655
1paq_A_651	1paq	A	MSESELENOMETHIONINE	L - 659
1paq_A_651	1paq	A	MSESELENOMETHIONINE	L - 662
1paq_A_651	1paq	A	MSESELENOMETHIONINE	I - 668
1paq_A_651	1paq	A	MSESELENOMETHIONINE	V - 672
1paq_A_651	1paq	A	MSESELENOMETHIONINE	I - 673
1paq_A_651	1paq	A	MSESELENOMETHIONINE	W - 676
1paq_A_651	1paq	A	MSESELENOMETHIONINE	W - 677
1qi9_A_465	1qi9	A	VO4VANADATE ION	R - 480
1qi9_A_465	1qi9	A	VO4VANADATE ION	I - 485
1qi9_A_465	1qi9	A	VO4VANADATE ION	H - 486
2ahj_B_72	2ahj	B	CSD3-SULFINOALANINE	Y - 72
2ahj_B_72	2ahj	B	NONITROGEN OXIDE	Y - 72
2ahj_B_72	2ahj	B	DIO1,4-DIETHYLENE DIOXIDE	Y - 72
2ahj_B_72	2ahj	B	CSD3-SULFINOALANINE	R - 75
2ahj_B_72	2ahj	B	CSD3-SULFINOALANINE	Y - 76
2ahj_B_72	2ahj	B	FEFE (III) ION	Y - 76
2ahj_B_72	2ahj	B	NONITROGEN OXIDE	Y - 76
2ahj_B_72	2ahj	B	DIO1,4-DIETHYLENE DIOXIDE	Y - 76

Clusters included in this Subclass

CLUSTER: HH.4.107

CLUSTER: HH.5.53

CLUSTER: HH.6.4

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