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Information on SUBCLASS 4.4.2
Subclass Accession number: 2376
Subclass: 4.4.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0030151 (>50 %)  GO:0046914 (>50 %)  
SCOP : 53705 (>50 %)  53706 (>50 %)  53707 (>50 %)  
 Number of loops: 9

Average sequence ID (%) : 11.7 +/- 12.5
Average RMSD (Å) : 0.689 +/- 0.196

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXGphXXh
(φψ)-conformation: aagabpaa
Pattern: [ADEKNR][AGLM][ilvy]xx[gr]x[ailvy][ADEPQST][adegnpqs][agipvy]x[AILMVY]x[ADGRT]
Conservation:0.268-0.0120.545-0.616-0.8662.875-0.2190.3380.205-0.827-0.899-0.6740.976-1.063-0.032
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1brw_A_181brw   A2640RGYTNGDIPDYQMSAHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1ek9_A_3601ek9   A360374AGYSVGTRTIVDVLDHHHHTTSS-HHHHHHaaaaavabbaaaaaa
1h6k_A_1211h6k   A133147DLVNCHVIAAPSMVAHHHHTTSB-HHHHHHaaaaavabxaaaaaa
1o17_A_181o17   A2640KAIIRGEVPEILVSAHHHHTT-S-HHHHHHaaaaavabpaaaaaa
1oe0_A_1141oe0   A117131NMRRNGSLEQGMYNTHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1rlr_*_1021rlr   -108122KMVEMGKYDNHLLEDHHHHTTSS-THHHHHaaaaavabxaaaaaa
1uou_A_511uou   A5973AAVVNGSAQGAQIGAHHHHHT-S-HHHHHHaaaaagaxxaaaaaa
1uw4_B_8651uw4   B877891ELYNYRMVESAVIFRHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1v8g_A_151v8g   A2337RALMAGEVSPVRAAGHHHHTT-S-HHHHHHaaaaavabxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1brw_A_181brw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID I - 45
1brw_A_181brw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Y - 46
1brw_A_181brw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID F - 47
1brw_A_181brw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID R - 48
1ek9_A_3601ek9   A     MSESELENOMETHIONINE A - 360
1ek9_A_3601ek9   A     MSESELENOMETHIONINE G - 361
1ek9_A_3601ek9   A     MSESELENOMETHIONINE Y - 362
1ek9_A_3601ek9   A     MSESELENOMETHIONINE S - 363
1ek9_A_3601ek9   A     MSESELENOMETHIONINE R - 367
1ek9_A_3601ek9   A     MSESELENOMETHIONINE T - 368
1ek9_A_3601ek9   A     MSESELENOMETHIONINE V - 370
1ek9_A_3601ek9   A     MSESELENOMETHIONINE D - 371
1ek9_A_3601ek9   A     MSESELENOMETHIONINE V - 372
1ek9_A_3601ek9   A     MSESELENOMETHIONINE D - 374
1ek9_A_3601ek9   A     MSESELENOMETHIONINE A - 375
1oe0_A_1141oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE F - 114
1oe0_A_1141oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE V - 115
1oe0_A_1141oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE M - 118

Clusters included in this Subclass
CLUSTER: HH.5.30