ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.5.2

Subclass Accession number: 2378
Subclass: 4.5.2

PSSM

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 10.2 +/- 11.3
Average RMSD (Å) : 0.757 +/- 0.294

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XXcXhXhX
(φψ)-conformation:	aalappaa

Pattern:	x	x	[aiklv]	[adekrs]	x	[EGN]	[aiklv]	[agil]	[DGPST]	[afpv]	[hkprs]	x	x	[ADEGQR]	x
Conservation:	-0.207	-0.849	-0.527	-0.265	-0.097	3.317	-0.041	-0.121	0.601	-0.434	0.040	-0.974	-0.075	0.195	-0.563

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a0c_A_392	1a0c	A	395	409	ADIVSGKADFRSLEK	HHHHHT---HHHHHH	aaaaavaxbaaaaaa
1ail_*_3	1ail	-	21	35	QVVDQELGDAPFLDR	HHHHTT---HHHHHH	aaaaavaxxaaaaaa
1ewq_A_332	1ewq	A	337	351	TRLELGRASPKDLGA	HHHHTT---HHHHHH	aaaaavapxaaaaaa
1hzf_A_1143	1hzf	A	1162	1176	EKASAGLLGAHAAAI	HHHHHT---HHHHHH	aaaaavaxxaaaaaa
1j5w_A_229	1j5w	A	245	259	LLDARGAISVSQRQT	HHHHTT---HHHHHH	aaaaalabxaaaaaa
1kkh_A_238	1kkh	A	251	265	LLKKLNISTPKLDRI	HHHTTT---HHHHHH	aaaaalabbaaaaaa
1ufa_A_434	1ufa	A	434	448	EAARRGVLPEGVLRQ	HHHHH--S-HHHHHH	aaaaalaxwaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hzf_A_1143	1hzf	A	MSESELENOMETHIONINE	L - 1169
1hzf_A_1143	1hzf	A	MSESELENOMETHIONINE	G - 1170
1hzf_A_1143	1hzf	A	MSESELENOMETHIONINE	A - 1171
1hzf_A_1143	1hzf	A	MSESELENOMETHIONINE	A - 1174
1j5w_A_229	1j5w	A	MSESELENOMETHIONINE	D - 234
1j5w_A_229	1j5w	A	MSESELENOMETHIONINE	Y - 235
1j5w_A_229	1j5w	A	MSESELENOMETHIONINE	I - 236
1j5w_A_229	1j5w	A	MSESELENOMETHIONINE	L - 237
1j5w_A_229	1j5w	A	MSESELENOMETHIONINE	K - 238
1j5w_A_229	1j5w	A	MSESELENOMETHIONINE	C - 239
1j5w_A_229	1j5w	A	MSESELENOMETHIONINE	Y - 260
1j5w_A_229	1j5w	A	MSESELENOMETHIONINE	K - 262
1j5w_A_229	1j5w	A	MSESELENOMETHIONINE	R - 263
1j5w_A_229	1j5w	A	MSESELENOMETHIONINE	I - 264
1j5w_A_229	1j5w	A	MSESELENOMETHIONINE	Q - 265
1ufa_A_434	1ufa	A	MSESELENOMETHIONINE	E - 434
1ufa_A_434	1ufa	A	MSESELENOMETHIONINE	A - 435
1ufa_A_434	1ufa	A	MSESELENOMETHIONINE	A - 436
1ufa_A_434	1ufa	A	MSESELENOMETHIONINE	R - 437
1ufa_A_434	1ufa	A	MSESELENOMETHIONINE	V - 445
1ufa_A_434	1ufa	A	MSESELENOMETHIONINE	L - 446
1ufa_A_434	1ufa	A	MSESELENOMETHIONINE	R - 447
1ufa_A_434	1ufa	A	MSESELENOMETHIONINE	Q - 448

Clusters included in this Subclass

CLUSTER: HH.4.83

CLUSTER: HH.5.108