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Information on SUBCLASS 4.6.2
Subclass Accession number: 2383
Subclass: 4.6.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0046914 (>75 %)  
 Number of loops: 12

Average sequence ID (%) : 11.3 +/- 11.7
Average RMSD (Å) : 1.058 +/- 0.271

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXGXpphX
(φψ)-conformation: aalpapaa
Pattern: xxxxxxx[EGR]x[denrt][DEKNRST]xxx[afilt]xxx
Conservation:-0.694-0.571-0.690-0.770-0.398-0.0030.0453.3430.0430.3011.265-0.387-0.558-0.9660.546-0.383-0.4110.288
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1csh_*_2091csh   -211228HNFTNMLGYTDPQFTELMHHHHHHHT---HHHHHHHaaaaaaavbapaaaaaaa
1e5k_A_1421e5k   A146163LLEYLQAGERRVMVFMRLHHHHHHTT---HHHHHHHaaaaaaavxaxaaaaaaa
1gwu_A_1451gwu   A149166KDSFRNVGLNRSSDLVALHHHHHHHT---HHHHHHHaaaaaaagbaxaaaaaaa
1hyp_*_371hyp   -4562CIQLRALGILNLNRNLQLHHHHHHHT-S-HHHHHHHaaaaaaavxaxaaaaaaa
1jb0_A_1431jb0   A144161FQLWRASGITNEFQLYCTHHHHHHHT--SHHHHHHHaaaaaaavxabaaaaaaa
1jgt_A_3091jgt   A310327PYAVWASESVDPDIIEYLHHHHHHH----HHHHHHHaaaaaaalbaxaaaaaaa
1kl9_A_911kl9   A112129RHVAEVLEYTKDEQLESLHHHHHHTT--SHHHHHHHaaaaaaalxabaaaaaaa
1nbw_A_4411nbw   A446463LLIKTELGLEDLSLAEAIHHHHHHHT-S-HHHHHHHaaaaaaavxabaaaaaaa
1qgi_A_1491qgi   A153170VEQARQRGFTSAVTIGSFHHHHHHTT---HHHHHHHaaaaaaavbaxaaaaaaa
1qxo_A_1121qxo   A113130LVGGIKYRFDDLRNSLERHHHHHHHT-SSTHHHHHHaaaaaaalxabaaaaaaa
1qzz_A_411qzz   A4158LVDHLLAGADTLAGLADRHHHHHHTT--SHHHHHHHaaaaaaagxNbaaaaaaa
1usg_A_2751usg   A288305ATALERTGSDEPLALVKDHHHHHHH----HHHHHHHaaaaaaavxaxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 148
1gwu_A_1451gwu   A     CACALCIUM ION L - 148
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 151
1gwu_A_1451gwu   A     CACALCIUM ION S - 151
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 152
1gwu_A_1451gwu   A     CACALCIUM ION F - 152
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 163
1gwu_A_1451gwu   A     CACALCIUM ION L - 163
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 166
1gwu_A_1451gwu   A     CACALCIUM ION L - 166
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 167
1gwu_A_1451gwu   A     CACALCIUM ION S - 167
1jb0_A_1431jb0   A     CACALCIUM ION L - 143
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 143
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A Q - 145
1jb0_A_1431jb0   A     CACALCIUM ION L - 146
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 146
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A W - 147
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A A - 149
1jb0_A_1431jb0   A     CACALCIUM ION S - 150
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A S - 150
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A G - 151
1jb0_A_1431jb0   A     CACALCIUM ION I - 152
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A I - 152
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A T - 153
1jb0_A_1431jb0   A     CACALCIUM ION F - 156
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A F - 156
1jb0_A_1431jb0   A     CACALCIUM ION Q - 157
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A Q - 157
1jb0_A_1431jb0   A     CACALCIUM ION C - 160
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A C - 160
1jb0_A_1431jb0   A     BCRBETA-CAROTENE C - 160
1jb0_A_1431jb0   A     CACALCIUM ION T - 161
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A T - 161
1jb0_A_1431jb0   A     BCRBETA-CAROTENE T - 161
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A A - 162
1jb0_A_1431jb0   A     BCRBETA-CAROTENE A - 162
1jb0_A_1431jb0   A     BCRBETA-CAROTENE I - 163
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A G - 164
1jb0_A_1431jb0   A     BCRBETA-CAROTENE G - 164
1jb0_A_1431jb0   A     BCRBETA-CAROTENE G - 165
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 166
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A M - 168
1jb0_A_1431jb0   A     BCRBETA-CAROTENE M - 168
1jb0_A_1431jb0   A     CACALCIUM ION L - 171
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 171
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A M - 172
1jb0_A_1431jb0   A     CACALCIUM ION L - 173
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 173
1jb0_A_1431jb0   A     CACALCIUM ION F - 174
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A F - 174
1jb0_A_1431jb0   A     CACALCIUM ION A - 175
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A A - 175
1jb0_A_1431jb0   A     CACALCIUM ION G - 176
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A G - 176
1jb0_A_1431jb0   A     CACALCIUM ION W - 177
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A W - 177
1jb0_A_1431jb0   A     CACALCIUM ION F - 178
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A F - 178
1jb0_A_1431jb0   A     CACALCIUM ION H - 179
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A H - 179
1jb0_A_1431jb0   A     CACALCIUM ION Y - 180
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A Y - 180
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A H - 181
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE I - 323
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE Y - 326
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE L - 327
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER P - 329
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE P - 329
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER L - 330
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE L - 330
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER L - 333
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER Y - 334
1kl9_A_911kl9   A     MSESELENOMETHIONINE A - 94
1kl9_A_911kl9   A     MSESELENOMETHIONINE C - 97
1kl9_A_911kl9   A     MSESELENOMETHIONINE E - 98
1kl9_A_911kl9   A     MSESELENOMETHIONINE F - 101
1kl9_A_911kl9   A     ZNZINC ION H - 113
1kl9_A_911kl9   A     ZNZINC ION E - 116
1qgi_A_1491qgi   A     GCSD-GLUCOSAMINE L - 175
1qgi_A_1491qgi   A     GCSD-GLUCOSAMINE N - 176
1qxo_A_1121qxo   A     MSESELENOMETHIONINE D - 112
1qxo_A_1121qxo   A     EGLETHYLENE GLYCOL L - 113
1qxo_A_1121qxo   A     MSESELENOMETHIONINE V - 114
1qxo_A_1121qxo   A     EGLETHYLENE GLYCOL V - 114
1qxo_A_1121qxo   A     MSESELENOMETHIONINE G - 115
1qxo_A_1121qxo   A     EGLETHYLENE GLYCOL I - 117
1qxo_A_1121qxo   A     MSESELENOMETHIONINE K - 118
1qxo_A_1121qxo   A     MSESELENOMETHIONINE Y - 119
1qxo_A_1121qxo   A     NCOCOBALT HEXAMMINE ION Y - 119
1qxo_A_1121qxo   A     NCOCOBALT HEXAMMINE ION R - 120
1qxo_A_1121qxo   A     NCOCOBALT HEXAMMINE ION F - 121
1qxo_A_1121qxo   A     NCOCOBALT HEXAMMINE ION D - 122
1qxo_A_1121qxo   A     MSESELENOMETHIONINE R - 125
1qxo_A_1121qxo   A     MSESELENOMETHIONINE N - 126
1qxo_A_1121qxo   A     MSESELENOMETHIONINE S - 127
1qxo_A_1121qxo   A     EPS5-[(1-CARBOXYVINYL)OXY]-4-HYDROXY-3-(PHOSPHONOOXY) CYCLOHEX-1-ENE-1-CARBOXYLIC ACID L - 128
1qxo_A_1121qxo   A     MSESELENOMETHIONINE E - 129
1qxo_A_1121qxo   A     FMNFLAVIN MONONUCLEOTIDE S - 131
1qxo_A_1121qxo   A     EPS5-[(1-CARBOXYVINYL)OXY]-4-HYDROXY-3-(PHOSPHONOOXY) CYCLOHEX-1-ENE-1-CARBOXYLIC ACID S - 131
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e5k_A_1421e5k   A CI1CITRIC ACID BINDING SITE FOR RESIDUE 302R - 155
1e5k_A_1421e5k   A CI1CITRIC ACID BINDING SITE FOR RESIDUE 302R - 156
1e5k_A_1421e5k   A CI1CITRIC ACID BINDING SITE FOR RESIDUE 302M - 158

Clusters included in this Subclass
CLUSTER: HH.4.31