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Information on SUBCLASS 4.11.1
Subclass Accession number: 2396
Subclass: 4.11.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 15.6 +/- 16.3
Average RMSD (Å) : 0.973 +/- 0.290

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: hXpXXpXX
(φψ)-conformation: aapgbpaa
Pattern: xxxx[giklt][KNQRS][gnr]x[KNST][afgiklv][aegkt][emr][AILVY]x[adgknq][ailmtv]
Conservation:-1.103-0.467-0.555-0.801-0.4011.6300.105-0.6252.298-1.555-0.2370.8280.851-0.3590.0890.302
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1azo_*_141azo   -2035QAQQLSGYTLGELAALHHHHTTT-BHHHHHHHaaaaaxgxxaaaaaaa
1fs1_B_1131fs1   B123138VANMIKGKTPEEIRKTHHHHHTT--HHHHHHHaaaaapvbbaaaaaaa
1hb6_A_491hb6   A5772AWNELKGTSKEDAMKAHHHHTTT--HHHHHHHaaaaapgxxaaaaaaa
1i4j_A_141i4j   A2035VVDLIRGKSLEEARNIHHHHHTT-BHHHHHHHaaaaapvxxaaaaaaa
1jj2_Q_251jj2   Q3146IAREIKGKTAGEAVDYHHHHHTTSBHHHHHHHaaaaapvxxaaaaaaa
1lj9_A_921lj9   A109124NQVALQGLSEVEISQLHHHHTTT--HHHHHHHaaaaapgxxaaaaaaa
1m3q_A_1371m3q   A143158SFICSSNNNIARITGMHHHHHTT--HHHHHHHaaaaaplbbaaaaaaa
1mpg_A_1131mpg   A119134RAILGQLVSVAMAAKLHHHHTTTS-HHHHHHHaaaaaxUbxaaaaaaa
1ngn_A_4301ngn   A436451ATIFLNRTSGKMAIPVHHHHHTTS-HHHHHHHaaaaapvbxaaaaaaa
1pu6_A_311pu6   A3651GAVLTQNTKFEAVLKSHHHHTTTS-HHHHHHHaaaaapvbbaaaaaaa
1qr0_A_1161qr0   A116131LEIAKRFFSKTEYSDLHHHHSSSS-HHHHHHHaxgaabNbxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1azo_*_141azo   *     EDO1,2-ETHANEDIOL E - 14
1azo_*_141azo   *     EDO1,2-ETHANEDIOL L - 18
1azo_*_141azo   *     EDO1,2-ETHANEDIOL A - 21
1azo_*_141azo   *     EDO1,2-ETHANEDIOL Q - 22
1azo_*_141azo   *     EDO1,2-ETHANEDIOL Q - 23
1azo_*_141azo   *     EDO1,2-ETHANEDIOL S - 25
1azo_*_141azo   *     EDO1,2-ETHANEDIOL G - 26
1azo_*_141azo   *     EDO1,2-ETHANEDIOL Y - 27
1m3q_A_1371m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE F - 144
1m3q_A_1371m3q   A     ANG8-AMINOGUANINE F - 144
1m3q_A_1371m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE S - 147
1m3q_A_1371m3q   A     ANG8-AMINOGUANINE S - 147
1m3q_A_1371m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE S - 148
1m3q_A_1371m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE N - 149
1m3q_A_1371m3q   A     CACALCIUM ION N - 149
1m3q_A_1371m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE N - 150
1m3q_A_1371m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE N - 151
1m3q_A_1371m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE I - 152
1m3q_A_1371m3q   A     ANG8-AMINOGUANINE I - 152
1m3q_A_1371m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE A - 153
1m3q_A_1371m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE I - 155
1m3q_A_1371m3q   A     ANG8-AMINOGUANINE I - 155
1pu6_A_311pu6   A     SEO2-MERCAPTOETHANOL G - 36
1pu6_A_311pu6   A     SEO2-MERCAPTOETHANOL T - 40
1pu6_A_311pu6   A     SEO2-MERCAPTOETHANOL F - 45

Clusters included in this Subclass
CLUSTER: HH.3.268
CLUSTER: HH.4.149
CLUSTER: HH.4.80
CLUSTER: HH.6.73