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Information on SUBCLASS 4.25.1
Subclass Accession number: 2415
Subclass: 4.25.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.4 (>75 %)  2.4.1 (>75 %)  2.4.1.13.2 (>75 %)  3.2.2 (>75 %)  3.2.2.23
GO : GO:0003906 (>75 %)  GO:0004518 (>75 %)  GO:0004519 (>75 %)  GO:0004536 (>75 %)  GO:0008270 (>75 %)  GO:0008534 (>75 %)  GO:0016301 (>75 %)  GO:0016788 (>75 %)  GO:0016798 (>75 %)  GO:0016799 (>75 %)  GO:0016829 (>75 %)  GO:0016835 (>75 %)  GO:0019104 (>75 %)  GO:0046914 (>75 %)  
SCOP : 46946 (>75 %)  47953 (>75 %)  47954 (>75 %)  47955 (>75 %)  52539 (>75 %)  52540 (>75 %)  53755 (>75 %)  53756 (>75 %)  53766 (>75 %)  81297 (>75 %)  81626 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 8.3 +/- 10.9
Average RMSD (Å) : 1.100 +/- 0.082

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: pppXhcXh
(φψ)-conformation: pabpppaa
Pattern: [AEL][EGS][EKY][FLV][EGRS][AEKT]xx[FPT][ILPV][DEK]x[APTV][AEQT][FKL]x
Conservation:-0.6520.7480.8021.308-0.656-0.3230.325-0.768-0.271-0.1012.623-1.434-0.434-0.1010.036-1.101
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ash_*_1051ash   -116131EEYLGKKTTLDEPTKQHHHHHHHS---HHHHHaaaaaaabxxxaaaaa
1f5q_B_911f5q   B102117AGKVRAYMPIKATQLAHHHHH-SS---HHHHHaaaaaxaxpxxaaaaa
1k7j_A_721k7j   A7287LSELSTYSFVDNVAFRHHHHHHHB---HHHHHaaaaaaabxbxaaaaa
1vin_*_2531vin   -264279ASKFEEIYPPEVAEFVHHHHH-SS---HHHHHaaaaaxabxxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ash_*_1051ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 107
1ash_*_1051ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE W - 108
1ash_*_1051ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 111
1ash_*_1051ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE W - 112
1ash_*_1051ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 140
1k7j_A_721k7j   A     MSESELENOMETHIONINE L - 72
1k7j_A_721k7j   A     MSESELENOMETHIONINE E - 74
1k7j_A_721k7j   A     MSESELENOMETHIONINE L - 75
1k7j_A_721k7j   A     MSESELENOMETHIONINE S - 76
1k7j_A_721k7j   A     MSESELENOMETHIONINE Y - 78
1k7j_A_721k7j   A     MSESELENOMETHIONINE S - 79
1k7j_A_721k7j   A     MSESELENOMETHIONINE V - 81
1k7j_A_721k7j   A     MSESELENOMETHIONINE V - 84
1k7j_A_721k7j   A     MSESELENOMETHIONINE A - 85
1k7j_A_721k7j   A     MSESELENOMETHIONINE F - 86
1k7j_A_721k7j   A     MSESELENOMETHIONINE R - 87

Clusters included in this Subclass
CLUSTER: HH.5.131