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Information on SUBCLASS 5.1.1
Subclass Accession number: 2434
Subclass: 5.1.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 68

Average sequence ID (%) : 13.1 +/- 14.5
Average RMSD (Å) : 1.135 +/- 0.253

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXcXphpXp
(φψ)-conformation: aalbpppaa
Pattern: xxxx[degknrs]x[dehknpqrst][acfilmpvwy][deknprst]x[adegknqrst]x[afilmvwy]
Conservation:-0.877-0.673-0.905-0.4712.254-0.8310.2620.2291.313-1.0900.514-0.4250.700
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a41_*_2481a41   -260272AEVVGHTPSISKRHHHHSS---HHHHaaaagbxxpaaaa
1aco_*_181aco   -2941RKRLNRPLTLSEKHHHH-S---HHHHaaaalbxbxaaaa
1ais_B_11511ais   B11631175CRLLKVPRTLDEIHHHHT----HHHHaaaavbwbpaaaa
1alv_A_1921alv   A196208FEAAGFHLNEHLYHHHHT----HHHHaaaagbbbxaaaa
1aqu_A_2001aqu   A208220IEFLERKPSAELVHHHTT----HHHHaaaavbxwxaaaa
1ash_*_821ash   -96108HARDHVHMPPEVWHHHTT----HHHHaaaalxxbpaaaa
1b4a_A_221b4a   A2941LREAGFNVTQATVHHHTT----HHHHaaaavbxbbaaaa
1cfr_*_351cfr   -5062AIRLGGKISDGSFHHHHT-B--HHHHaaaavbbbxaaaa
1cke_A_1511cke   A162174LQVKGFSVNFERLHHHHT----HHHHaaaagxbbpaaaa
1csh_*_891csh   -95107LLVTGQIPTPEQVHHHHSS---HHHHaaaavbxxxaaaa
1d02_A_121d02   A1830LKASGAEQNLYNVHHHTT----HHHHaaaavpxxbaaaa
1dhs_*_1741dhs   -194206QNTEGVKWTPSKMHHHS-----HHHHaaaavxbxbaaaa
1dmt_A_2381dmt   A256268RQEERLPIDENQLHHHTT----HHHHaaaavbxbbaaaa
1dw0_A_781dw0   A90102NSVIGRDCTPGEKHHHHSS---HHHHaaaavbxxxaaaa
1fmj_A_2551fmj   A263275ADFLGKKLSEEQIHHHTT----HHHHaaaavbbbxaaaa
1fx7_A_71fx7   A1830LEEEGVTPLRARIHHHHTS---HHHHaaaavbxwbaaaa
1g0u_B_821g0u   B100112LKTYNEDIPVEILHHHHSS---HHHHaaaavbxxxaaaa
1g0u_C_821g0u   C100112RLTLEDPVTVEYLHHHHSS---HHHHaaaalbwxxaaaa
1g0u_D_851g0u   D100112NLYYDEDINVESLHHHHSS---HHHHaaaalbxxxaaaa
1g0u_F_821g0u   F100112KKLYKTPIPIPAFHHHHSS---HHHHaaaagxppxaaaa
1g0u_G_821g0u   G100112RYKYGYDMPCDVLHHHHSS---HHHHaaaavbpxxaaaa
1g0u_H_491g0u   H6779SLYTSREPRVVSAHHHHTS---HHHHaaaalbxxbaaaa
1g0u_I_491g0u   I6779KLKEERAIEPETFHHHHSS---HHHHaaaavbxxbaaaa
1g0u_J_491g0u   J6779SIREDYELSPQAVHHHHTS---HHHHaaaavbbpxaaaa
1g0u_K_491g0u   K6779ELREKERISVAAAHHHHSS---HHHHaaaalbxxxaaaa
1g2r_A_641g2r   A6678NRSFSMEVEESFYHHHHTS---HHHHaaaalbxxxaaaa
1g3s_A_71g3s   A1830LEEEGVTPLRARIHHHTT---BHHHHaaaavxxwbaaaa
1gak_A_601gak   A7183LQLKHLPVNKKTLHHHTT---SHHHHaaaavbxbbaaaa
1gak_A_81gak   A3345FRDMRWNLGPGFVHHHHT----HHHHaaaavbpxxaaaa
1gu2_A_851gu2   A97109NDILGADCSPSEKHHHHSS---HHHHaaaavbxxxaaaa
1h99_A_1271h99   A141153KNKTGVSLPEDEAHHHHS----HHHHaaaavxbxxaaaa
1h99_A_681h99   A8294KLQLGKKLNDSIYHHHH-S---THHHaaaavbxbpaaaa
1hqv_A_1121hqv   A119131LSGFGYRLSDQFHHHHHTB---HHHHaaaagxbbxaaaa
1hrd_A_3751hrd   A386398QNSERLSWTAEEVHHHHTS---HHHHaaaavbbxxaaaa
1id1_A_1271id1   A137149RVLNGEEINNDMLHHHTT----HHHHaaaavxxbxaaaa
1in4_A_1821in4   A193205ASLMDVEIEDAAAHHHTT--B-HHHHaaaalbxbxaaaa
1iom_A_1531iom   A159171YMANGVEPSPEQAHHHHSS---HHHHaaaavbxxxaaaa
1iom_A_431iom   A4961LLLHGRLPRRQELHHHHSS---HHHHaaaavbxxxaaaa
1j1j_A_921j1j   A107119YLETETLVTREAVHHHHSS---HHHHaaaalbxpxaaaa
1j7l_A_2361j7l   A242254FDLLGIKPDWEKIHHHHTS---HHHHaaaavbxwbaaaa
1j99_A_1911j99   A199211CQFLGKTLEPEELHHHHT----HHHHaaaavbbbxaaaa
1jbw_A_2601jbw   A276288AKQTEWPLTPQNIHHHTT----HHHHaaaalbwbxaaaa
1ji6_A_1151ji6   A115127EVLIDKKIEEYAKHHHHT----HHHHaaaavbbxpaaaa
1jmx_A_341jmx   A4557QVMHGLQISDDDRHHHH-----HHHHaaaavpbbxaaaa
1k3p_A_821k3p   A88100ILLNGEKPTQEQYHHHHSS---HHHHaaaavbxxxaaaa
1k47_A_1061k47   A119131LALYNLSVDQNLLHHHTT----HHHHaaaalbbxxaaaa
1k94_A_1411k94   A148160IGLMGYRLSPQTLHHHTT----HHHHaaaavxbbxaaaa
1kkh_A_1161kkh   A129141SGFYNKELKDDEIHHTTT----HHHHaaaalbxxxaaaa
1knz_A_81knz   A3042LENMGIEYDYQDIHHHTT----HHHHaaaavbxbbaaaa
1kqp_A_1081kqp   A119131QQETGDQLTDFNKHHHHS----HHHHaaaavbxxxaaaa
1l5j_A_8081l5j   A814826AALIGKLPTPEEYHHHHSB---HHHHaaaavbxxxaaaa
1mzb_A_21mzb   A719LRKAGLKVTLPRVHHHTT----HHHHaaaavbxxbaaaa
1n81_A_1561n81   A167179EYVKDVKFTDDQYHHHHT----HHHHaaaalbbxxaaaa
1n97_A_1281n97   A142154RALFGKPLSPSLAHHHHSS---HHHHaaaavbpxxaaaa
1njf_A_1801njf   A191203LNEEHIAHEPRALHHHHT--B-HHHHaaaavbxbbaaaa
1npy_A_2351npy   A248260ELYTHQRPSDELIHHHHS----HHHHaaaavbxwxaaaa
1nvt_A_2531nvt   A265277KIWTGVEPNIEVMHHHHSS---HHHHaaaavbxxxaaaa
1o5z_A_2591o5z   A271283LEATGLPLSEKAIHHHH-----HHHHaaaavxwbxaaaa
1ojr_A_2531ojr   A260272GKRFGVTPLASALHHHHT----HHHHaaaavbbxpaaaa
1qq5_A_311qq5   A4961RALMGRYADFWSVHHHHT----HHHHaaaavbxbxaaaa
1qq5_A_581qq5   A7082LGTLGLEPDESFLHHHTT----HHHHaaaavxbxxaaaa
1rp3_A_891rp3   A106118KEKLGREPTDEEVHHHHSS---HHHHaaaavbxxxaaaa
1rql_A_241rql   A3345FHKRGVAITAEEAHHTTT----HHHHaaaavbxbbaaaa
1uhn_A_1411uhn   A152164LAESGMNLKDTVIHHHTT----HHHHaaaavbbbxaaaa
1vi2_A_2601vi2   A268280TLWTGKDFPLEYVHHHHSS---HHHHaaaavbxxwaaaa
1vk3_A_31vk3   A1022KEKLGREPTFVELHHHHTS---HHHHaaaavbxxxaaaa
1zrn_*_331zrn   -5163RSLMNRYVNFQQAHHHHT----HHHHaaaavbxbxaaaa
1zrn_*_601zrn   -7284CRHLGLDLDARTRHHHHT----HHHHaaaavxxbxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ash_*_821ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 88
1ash_*_821ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 92
1ash_*_821ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE R - 95
1ash_*_821ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 96
1ash_*_821ash   *     OXYOXYGEN MOLECULE H - 96
1ash_*_821ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE D - 99
1ash_*_821ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 101
1ash_*_821ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 103
1ash_*_821ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 107
1ash_*_821ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE W - 108
1ash_*_821ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 111
1ash_*_821ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE W - 112
1dhs_*_1741dhs   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 176
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 80
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 81
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 84
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 85
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 88
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 89
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 91
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 92
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 93
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 97
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 105
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 106
1dw0_A_781dw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 109
1fmj_A_2551fmj   A     HGMERCURY (II) ION L - 255
1fmj_A_2551fmj   A     HGMERCURY (II) ION P - 256
1fmj_A_2551fmj   A     HGMERCURY (II) ION G - 257
1fmj_A_2551fmj   A     HGMERCURY (II) ION C - 258
1fmj_A_2551fmj   A     HGMERCURY (II) ION I - 259
1fmj_A_2551fmj   A     HGMERCURY (II) ION R - 261
1fmj_A_2551fmj   A     HGMERCURY (II) ION Q - 276
1fmj_A_2551fmj   A     HGMERCURY (II) ION L - 278
1fmj_A_2551fmj   A     HGMERCURY (II) ION C - 279
1fmj_A_2551fmj   A     HGMERCURY (II) ION E - 280
1fx7_A_71fx7   A     COCOBALT (II) ION M - 10
1fx7_A_71fx7   A     COCOBALT (II) ION R - 13
1fx7_A_71fx7   A     COCOBALT (II) ION G - 22
1fx7_A_71fx7   A     COCOBALT (II) ION V - 23
1g0u_D_851g0u   D     MGMAGNESIUM ION Y - 103
1g0u_D_851g0u   D     MGMAGNESIUM ION D - 104
1g0u_D_851g0u   D     MGMAGNESIUM ION E - 105
1g0u_G_821g0u   G     MGMAGNESIUM ION I - 122
1g0u_G_821g0u   G     MGMAGNESIUM ION Y - 123
1g0u_G_821g0u   G     MGMAGNESIUM ION T - 124
1g0u_G_821g0u   G     MGMAGNESIUM ION Q - 125
1gu2_A_851gu2   A     HECHEME C K - 87
1gu2_A_851gu2   A     HECHEME C V - 88
1gu2_A_851gu2   A     HECHEME C E - 91
1gu2_A_851gu2   A     HECHEME C F - 92
1gu2_A_851gu2   A     HECHEME C H - 95
1gu2_A_851gu2   A     HECHEME C C - 96
1gu2_A_851gu2   A     HECHEME C I - 99
1gu2_A_851gu2   A     HECHEME C L - 100
1gu2_A_851gu2   A     HECHEME C C - 104
1gu2_A_851gu2   A     HECHEME C F - 112
1gu2_A_851gu2   A     HECHEME C L - 116
1hqv_A_1121hqv   A     CACALCIUM ION E - 114
1in4_A_1821in4   A     ADPADENOSINE-5'-DIPHOSPHATE I - 188
1in4_A_1821in4   A     ADPADENOSINE-5'-DIPHOSPHATE R - 191
1iom_A_431iom   A     GOLGLYCEROL L - 50
1iom_A_431iom   A     GOLGLYCEROL L - 51
1iom_A_431iom   A     GOLGLYCEROL H - 52
1iom_A_431iom   A     GOLGLYCEROL G - 53
1iom_A_431iom   A     GOLGLYCEROL R - 54
1iom_A_1531iom   A     GOLGLYCEROL H - 181
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE E - 196
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE C - 199
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE Q - 200
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE G - 203
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE K - 204
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE T - 205
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE L - 206
1jbw_A_2601jbw   A     ACQDIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER Y - 260
1jbw_A_2601jbw   A     ACQDIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER Q - 261
1jbw_A_2601jbw   A     ACQDIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER R - 263
1jbw_A_2601jbw   A     ACQDIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER N - 264
1jmx_A_341jmx   A     HECHEME C G - 36
1jmx_A_341jmx   A     HECHEME C W - 37
1jmx_A_341jmx   A     HECHEME C M - 39
1jmx_A_341jmx   A     HECHEME C S - 40
1jmx_A_341jmx   A     HECHEME C I - 41
1jmx_A_341jmx   A     HECHEME C R - 43
1jmx_A_341jmx   A     HECHEME C M - 44
1jmx_A_341jmx   A     HECHEME C M - 47
1jmx_A_341jmx   A     HECHEME C H - 48
1jmx_A_341jmx   A     HECHEME C G - 49
1jmx_A_341jmx   A     HECHEME C L - 50
1jmx_A_341jmx   A     HECHEME C I - 52
1jmx_A_341jmx   A     HECHEME C L - 60
1jmx_A_341jmx   A     HECHEME C L - 64
1k94_A_1411k94   A     CACALCIUM ION E - 143
1kkh_A_1161kkh   A     DIO1,4-DIETHYLENE DIOXIDE S - 116
1kkh_A_1161kkh   A     DIO1,4-DIETHYLENE DIOXIDE S - 117
1kkh_A_1161kkh   A     DIO1,4-DIETHYLENE DIOXIDE A - 118
1kqp_A_1081kqp   A     EDO1,2-ETHANEDIOL E - 121
1kqp_A_1081kqp   A     EDO1,2-ETHANEDIOL T - 122
1kqp_A_1081kqp   A     ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE F - 129
1kqp_A_1081kqp   A     ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE G - 132
1kqp_A_1081kqp   A     ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE N - 133
1kqp_A_1081kqp   A     ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE A - 136
1kqp_A_1081kqp   A     ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE R - 137
1kqp_A_1081kqp   A     ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE R - 139
1kqp_A_1081kqp   A     ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE Q - 143
1kqp_A_1081kqp   A     ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE Y - 144
1kqp_A_1081kqp   A     ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE G - 147
1kqp_A_1081kqp   A     ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE G - 148
1n97_A_1281n97   A     EGLETHYLENE GLYCOL H - 130
1n97_A_1281n97   A     EGLETHYLENE GLYCOL L - 133
1n97_A_1281n97   A     EGLETHYLENE GLYCOL A - 134
1n97_A_1281n97   A     EGLETHYLENE GLYCOL L - 135
1n97_A_1281n97   A     EGLETHYLENE GLYCOL L - 137
1n97_A_1281n97   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 140
1n97_A_1281n97   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 144
1n97_A_1281n97   A     EGLETHYLENE GLYCOL S - 150
1n97_A_1281n97   A     EGLETHYLENE GLYCOL P - 151
1n97_A_1281n97   A     EGLETHYLENE GLYCOL A - 154
1n97_A_1281n97   A     EGLETHYLENE GLYCOL E - 155
1n97_A_1281n97   A     EGLETHYLENE GLYCOL L - 158
1n97_A_1281n97   A     EGLETHYLENE GLYCOL M - 165
1n97_A_1281n97   A     EGLETHYLENE GLYCOL T - 168
1n97_A_1281n97   A     EGLETHYLENE GLYCOL R - 169
1njf_A_1801njf   A     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER Q - 186
1nvt_A_2531nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 253
1nvt_A_2531nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 254
1nvt_A_2531nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 255
1nvt_A_2531nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 256
1nvt_A_2531nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 257
1nvt_A_2531nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 259
1qq5_A_311qq5   A     FMTFORMIC ACID R - 39
1qq5_A_311qq5   A     FMTFORMIC ACID F - 58
1uhn_A_1411uhn   A     CACALCIUM ION A - 175
1vi2_A_2601vi2   A     MSESELENOMETHIONINE L - 260
1vi2_A_2601vi2   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 260
1vi2_A_2601vi2   A     MSESELENOMETHIONINE W - 261
1vi2_A_2601vi2   A     MSESELENOMETHIONINE Q - 262
1vi2_A_2601vi2   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Q - 262
1vi2_A_2601vi2   A     MSESELENOMETHIONINE G - 263
1vi2_A_2601vi2   A     MSESELENOMETHIONINE A - 264
1vi2_A_2601vi2   A     MSESELENOMETHIONINE Q - 266
1vi2_A_2601vi2   A     MSESELENOMETHIONINE F - 267
1vi2_A_2601vi2   A     MSESELENOMETHIONINE F - 275
1vi2_A_2601vi2   A     MSESELENOMETHIONINE Y - 279
1vi2_A_2601vi2   A     MSESELENOMETHIONINE V - 280
1vi2_A_2601vi2   A     MSESELENOMETHIONINE K - 281
1vi2_A_2601vi2   A     MSESELENOMETHIONINE Q - 282
1vk3_A_31vk3   A     MSESELENOMETHIONINE T - 18
1vk3_A_31vk3   A     MSESELENOMETHIONINE V - 20
1vk3_A_31vk3   A     MSESELENOMETHIONINE E - 21
1vk3_A_31vk3   A     MSESELENOMETHIONINE Q - 23
1vk3_A_31vk3   A     MSESELENOMETHIONINE A - 24
1vk3_A_31vk3   A     MSESELENOMETHIONINE F - 25
1vk3_A_31vk3   A     MSESELENOMETHIONINE S - 26
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ojr_A_2531ojr   A GO1GOL BINDING SITE FOR CHAIN AF - 263

Clusters included in this Subclass
CLUSTER: HH.4.180
CLUSTER: HH.4.5
CLUSTER: HH.5.1
CLUSTER: HH.5.28
CLUSTER: HH.6.0
CLUSTER: HH.6.87
CLUSTER: HH.7.0