Logo
Information on SUBCLASS 5.1.3
Subclass Accession number: 2436
Subclass: 5.1.3 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 11.9 +/- 12.6
Average RMSD (Å) : 0.936 +/- 0.361

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XXcXXhXXX
(φψ)-conformation: aalbpppaa
Pattern: xx[CILPTV]xxxx[deknrt][ael]x[DGNS]x[ehkprs][ILPV][DHNPST][hknpqrt]x[agilv]x
Conservation:-0.925-0.2981.151-0.587-0.432-0.857-1.0130.3800.845-0.8772.865-0.0520.2880.9900.626-0.345-1.3560.028-0.431
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cc1_L_741cc1   L8098ASVMAQDDAFGVKVTTNGRHHHHHHHHHHT----HHHHaaaaaaaaaavxbxxaaaa
1d7y_A_3711d7y   A374392FAPLRRLLAVGAKPDRAALHHHHHHHHHTT----HHHHaaaaaaaaaavpbxxaaaa
1ehk_A_791ehk   A88106IMVYLPARELNMRPNMGLMHHHHHHHHHHT----HHHHaaaaaaaaaalbxxxaaaa
1gnl_A_281gnl   A4563GQIATRLRAEGKAVDHRIDHHHHHHHHHTT----HHHHaaaaaaaaaavbxbxaaaa
1h16_A_1161h16   A116134KMIEGSCKAYNRELDPMIKHHHHHHHHHTT----HHHHaaaaaaaaaalbbxxaaaa
1k20_A_1211k20   A123141SIVYRMFKEHSVAVSKEIAHHHHHHHHHTT----HHHHaaaaaaaaaalbxbxaaaa
1ld8_B_6001ld8   B605623YWILHSLELLDEPIPQIVAHHHHHHHHHTT----HHHHaaaaaaaaaalbxbwaaaa
1qjb_A_191qjb   A2341AACMKSVTEQGAELSNEERHHHHHHHHHT-----HHHHaaaaaaaaaavxpxxaaaa
1r6t_A_1141r6t   A115133ELINRIERATGQRPHHFLRHHHHHHHHHH-S---HHHHaaaaaaaaaavbxppaaaa
1ubl_L_871ubl   L91109ASTRCVDNAVGVHIPKNATHHHHHHHHHHT----HHHHaaaaaaaaaavxbxxaaaa
1v93_A_2141v93   A215233RQLRRFTEVCGASIPGPLLHHHHHHHHHH-----HHHHaaaaaaaaaavxbbxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cc1_L_741cc1   L     NINICKEL (II) ION P - 74
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID P - 74
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID T - 75
1cc1_L_741cc1   L     FCOCARBONMONOXIDE-(DICYANO) IRON A - 76
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID A - 76
1cc1_L_741cc1   L     NINICKEL (II) ION H - 77
1cc1_L_741cc1   L     FCOCARBONMONOXIDE-(DICYANO) IRON H - 77
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID H - 77
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID F - 105
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID N - 108
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID Y - 109
1cc1_L_741cc1   L     FCOCARBONMONOXIDE-(DICYANO) IRON S - 112
1cc1_L_741cc1   L     H2SHYDROSULFURIC ACID S - 112
1ehk_A_791ehk   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 80
1ehk_A_791ehk   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 81
1ehk_A_791ehk   A     BNGB-NONYLGLUCOSIDE M - 103
1ehk_A_791ehk   A     BNGB-NONYLGLUCOSIDE G - 104
1ehk_A_791ehk   A     BNGB-NONYLGLUCOSIDE W - 107
1ehk_A_791ehk   A     BNGB-NONYLGLUCOSIDE L - 108
1ehk_A_791ehk   A     BNGB-NONYLGLUCOSIDE W - 110
1ehk_A_791ehk   A     BNGB-NONYLGLUCOSIDE W - 111
1ehk_A_791ehk   A     BNGB-NONYLGLUCOSIDE M - 112
1ehk_A_791ehk   A     BNGB-NONYLGLUCOSIDE I - 115
1h16_A_1161h16   A     COACOENZYME A K - 116
1h16_A_1161h16   A     COACOENZYME A M - 117
1h16_A_1161h16   A     DTLD-TREITOL Y - 125
1k20_A_1211k20   A     MNMANGANESE (II) ION A - 121
1k20_A_1211k20   A     MNMANGANESE (II) ION S - 122
1k20_A_1211k20   A     MNMANGANESE (II) ION G - 147
1k20_A_1211k20   A     GOLGLYCEROL S - 150
1k20_A_1211k20   A     MNMANGANESE (II) ION D - 151
1ld8_B_6001ld8   B     FPPFARNESYL DIPHOSPHATE W - 602
1ld8_B_6001ld8   B     U49(20S)-19,20,21,22-TETRAHYDRO-19-OXO-5H-18,20-ETHANO-12,14-ETHENO-6,10-METHENO-18H-BENZ[D]IMIDAZO[4,3-K][1, 6,9,12]OXATRIAZA-CYCLOOCTADECOSINE-9-CARBONITRILE W - 602
1ld8_B_6001ld8   B     U49(20S)-19,20,21,22-TETRAHYDRO-19-OXO-5H-18,20-ETHANO-12,14-ETHENO-6,10-METHENO-18H-BENZ[D]IMIDAZO[4,3-K][1, 6,9,12]OXATRIAZA-CYCLOOCTADECOSINE-9-CARBONITRILE W - 606
1qjb_A_191qjb   A     SEPPHOSPHOSERINE K - 49
1qjb_A_191qjb   A     SEPPHOSPHOSERINE R - 56
1qjb_A_191qjb   A     SEPPHOSPHOSERINE R - 60
1r6t_A_1141r6t   A     MSESELENOMETHIONINE L - 116
1r6t_A_1141r6t   A     MSESELENOMETHIONINE R - 119
1r6t_A_1141r6t   A     MSESELENOMETHIONINE I - 120
1ubl_L_871ubl   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) T - 87
1ubl_L_871ubl   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) H - 88
1ubl_L_871ubl   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) D - 123
1ubl_L_871ubl   L     CMOCARBON MONOXIDE D - 123
1v93_A_2141v93   A     DOXDIOXANE K - 235
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h16_A_1161h16   A COACOA BINDING SITE FOR CHAIN AK - 116
1h16_A_1161h16   A COACOA BINDING SITE FOR CHAIN AM - 117
1h16_A_1161h16   A DT1DTL BINDING SITE FOR CHAIN AT - 138
1h16_A_1161h16   A DT1DTL BINDING SITE FOR CHAIN AE - 139

Clusters included in this Subclass
CLUSTER: HH.4.115
CLUSTER: HH.6.13