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Information on SUBCLASS 5.5.1
Subclass Accession number: 2449
Subclass: 5.5.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005344 (>50 %)  
SCOP : 46457 (>50 %)  46458 (>50 %)  46463 (>50 %)  
 Number of loops: 9

Average sequence ID (%) : 15.1 +/- 14.7
Average RMSD (Å) : 0.678 +/- 0.282

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: hXGXXXpXX
(φψ)-conformation: aalababaa
Pattern: [agilvw][acgy]x[aglwy][FGLT][fltvwy][ail]x[DGR]xxx[DKNST]x[ADEKQRT][adeq][ACGL]x
Conservation:-0.645-0.554-0.013-0.852-0.425-0.1780.560-0.0173.007-1.153-0.163-0.7271.250-0.9190.1091.1700.094-0.545
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bu6_O_4381bu6   O444461AYLAGLAVGFWQNLDELQHHHHHHHTTSS--HHHHHaaaaaaaavababaaaaa
1d5r_A_1291d5r   A135152ICAYLLHRGKFLKAQEALHHHHHHHHTS-SSHHHHHaaaaaaaagababaaaaa
1dm9_A_111dm9   A1128LDKWLWAARFYKTRALARHHHHHHHTTSSSSHHHHHaaaaaaaavababaaaaa
1gpe_A_3771gpe   A380397WAEETVARGGFHNVTALKHHHHHHHTTS-S-HHHHHaaaaaaaavababaaaaa
1h3f_A_3711h3f   A371388VARLFTLAGLTPSNAEARHHHHHHHTTSSSSHHHHHaaaaaaaavababaaaaa
1o17_A_2821o17   A292309TAVALFALDRVGDFREGYHHHHHHHTTSSSSHHHHHaaaaaaaalababaaaaa
1qv0_A_1321qv0   A135152WKAYGKISGISPSQEDCEHHHHHHHHSS---HHHHHaaaaaaaavabaxaaaaa
1uou_A_3001uou   A310327GGALLWLSGHAGTQAQGAHHHHHHHHTS-SSHHHHHaaaaaaaavababaaaaa
1v8g_A_2781v8g   A287304AGAGFYAAGKTPSLKEGVHHHHHHHHTSSSSHHHHHaaaaaaaavababaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d5r_A_1291d5r   A     TARD(-)-TARTARIC ACID G - 129
1d5r_A_1291d5r   A     TARD(-)-TARTARIC ACID R - 130
1d5r_A_1291d5r   A     TARD(-)-TARTARIC ACID T - 131
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE N - 392
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE V - 393
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE T - 394
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE A - 395
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE L - 396
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE V - 398
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE L - 407
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE L - 408
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE D - 409
1qv0_A_1321qv0   A     CZHC2-HYDROPEROXY-COELENTERAZINE W - 135
1qv0_A_1321qv0   A     CZHC2-HYDROPEROXY-COELENTERAZINE Y - 138
1qv0_A_1321qv0   A     CZHC2-HYDROPEROXY-COELENTERAZINE S - 142
1qv0_A_1321qv0   A     GOLGLYCEROL G - 143
1qv0_A_1321qv0   A     CZHC2-HYDROPEROXY-COELENTERAZINE I - 144
1qv0_A_1321qv0   A     GOLGLYCEROL I - 144
1qv0_A_1321qv0   A     GOLGLYCEROL S - 145
1qv0_A_1321qv0   A     GOLGLYCEROL P - 146

Clusters included in this Subclass
CLUSTER: HH.5.80
CLUSTER: HH.5.81
CLUSTER: HH.6.36
CLUSTER: HH.7.31