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Information on SUBCLASS 5.5.2
Subclass Accession number: 2450
Subclass: 5.5.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.4 (>75 %)  2.4.2 (>75 %)  2.4.2.9
SCOP : 53270 (>75 %)  53271 (>75 %)  53272 (>75 %)  
 Number of loops: 7

Average sequence ID (%) : 12.8 +/- 13.0
Average RMSD (Å) : 0.700 +/- 0.115

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpcXhXpXp
(φψ)-conformation: aalababaa
Pattern: x[eqrs][dstv][AILMV][dehry]x[ekl]x[AEGKRS][DEGKNRS][GNR]x[FIY][dkpqrt][KST]x[AEK]x[EFKL]xxx[ail]
Conservation:-0.3920.1540.0241.052-0.309-0.315-0.185-1.066-0.110-0.0062.143-1.3141.579-0.4821.470-1.3262.0220.010-0.130-0.914-0.960-0.655-0.292
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e6i_A_3741e6i   A374396LSTMEIKLESNKYQKMEDFIYDAHHHHHHHHHTT--SSHHHHHHHHaaaaaaaaaavababaaaaaaaa
1eqf_A_14271eqf   A14271449LQTLRENVRKRLYPSREEFREHLHHHHHHHHHTT--SSHHHHHHHHaaaaaaaaaalababaaaaaaaa
1i1n_A_91i1n   A1032SELIHNLRKNGIIKTDKVFEVMLHHHHHHHHHTTS--SHHHHHHHHaaaaaaaaaavaxabaaaaaaaa
1icr_A_921icr   A96118KLVVDQEDADGRFATPEAKAANDHHHHHHHHHTT--SSHHHHHHHHaaaaaaaaaavababaaaaaaaa
1jg1_A_151jg1   A2244MRTVEMLKAEGIIRSKEVERAFLHHHHHHHHHTTS--SHHHHHHHHaaaaaaaaaavaxabaaaaaaaa
1jj2_O_1161jj2   O119141YRDLYDKAGGGEFDSVADLERYIHHHHHHHHHTT--SSHHHHHHHHaaaaaaaaaavababaaaaaaaa
1nh1_A_601nh1   A7395IRSAGDEISRGGITSFEELWGRAHHHHHHHHHTTS--SHHHHHHHHaaaaaaaaaavababaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e6i_A_3741e6i   A     ALYN(6)-ACETYLLYSINE N - 402
1e6i_A_3741e6i   A     ALYN(6)-ACETYLLYSINE C - 403
1e6i_A_3741e6i   A     ALYN(6)-ACETYLLYSINE Y - 406
1icr_A_921icr   A     FMNFLAVIN MONONUCLEOTIDE E - 102
1icr_A_921icr   A     FMNFLAVIN MONONUCLEOTIDE R - 107
1icr_A_921icr   A     FMNFLAVIN MONONUCLEOTIDE R - 121
1icr_A_921icr   A     NIONICOTINIC ACID F - 124

Clusters included in this Subclass
CLUSTER: HH.5.44