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Information on SUBCLASS 5.9.1
Subclass Accession number: 2454
Subclass: 5.9.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.7 (>75 %)  
GO : GO:0003700 (>75 %)  GO:0016772 (>75 %)  GO:0016829 (>75 %)  
SCOP : 46688 (>75 %)  46689 (>75 %)  46690 (>75 %)  47768 (>75 %)  
 Number of loops: 10

Average sequence ID (%) : 27.1 +/- 23.3
Average RMSD (Å) : 0.490 +/- 0.166

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXXXGhcXp
(φψ)-conformation: aappgbpaa
Pattern: x[aegkq][aefl][AFLTV][acgkltv][adkns]x[ekp][GN][AFIVW][DGS][klt][DEKRS]x[AC][degkq]
Conservation:-0.880-0.465-0.962-0.260-0.791-0.559-0.487-0.4182.537-0.0141.445-0.2440.426-0.6051.566-0.289
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bpy_A_561bpy   A5671GAEAKKLPGVGTKIAEHHHHHTSSS--HHHHHaaaaaaxxgxbaaaaa
1cuk_*_1071cuk   -107122VGALVKLPGIGKKTAEHHHHHTSTT--HHHHHaaaaaabpvxxaaaaa
1ezm_*_2271ezm   -233248FYLLANSPGWDTRKAFHHHHHTSTT--HHHHHaaaaaaxpvbbaaaaa
1jms_A_2441jms   A249264FKLFTSVFGVGLKTAEHHHHHTSTT--HHHHHaaaaaaxpvxxaaaaa
1m3q_A_2331m3q   A237252HKALCILPGVGTKVADHHHHTTSTT--HHHHHaaaaaaxxvbbaaaaa
1mun_*_1081mun   -108123FEEVAALPGVGRSTAGHHHHHTSTT--HHHHHaaaaaaxpvbxaaaaa
1nn5_A_991nn5   A103118VAFTGAKENFSLDWCKHHHHHTSTT--HHHHHaaaaaaxxvbxaaaaa
1pu6_A_1201pu6   A120135REWLLDQKGIGKESADHHHHHTSTT--HHHHHaaaaaaxxvxxaaaaa
1rzt_A_2961rzt   A296311YQEACSIPGIGKRMAEHHHHHHSTT--HHHHHaaaaaaxxgbbaaaaa
1rzt_A_3321rzt   A335350LELFSNIWGAGTKTAQHHHHHTSTT--HHHHHaaaaaaxpgbxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m3q_A_2331m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE K - 249
1m3q_A_2331m3q   A     ANG8-AMINOGUANINE K - 249
1m3q_A_2331m3q   A     ANG8-AMINOGUANINE C - 253
1m3q_A_2331m3q   A     ANG8-AMINOGUANINE L - 256
1m3q_A_2331m3q   A     ANG8-AMINOGUANINE M - 257
1mun_*_1081mun   *     IMDIMIDAZOLE S - 120
1mun_*_1081mun   *     IMDIMIDAZOLE T - 121
1mun_*_1081mun   *     IMDIMIDAZOLE A - 122
1mun_*_1081mun   *     IMDIMIDAZOLE A - 124
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE A - 99
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE S - 101
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE G - 102
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE V - 103
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE F - 105
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE T - 106
1nn5_A_991nn5   A     MGMAGNESIUM ION D - 115
1pu6_A_1201pu6   A     SEO2-MERCAPTOETHANOL E - 132

Clusters included in this Subclass
CLUSTER: HH.6.15