ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.13.1

Subclass Accession number: 2459
Subclass: 5.13.1

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 2.7 (>75 %)  2.7.1 (>75 %)  2.7.1.37 4.2 (>75 %)  4.2.1 (>75 %)  4.2.1.40
GO : GO:0004672 (>75 %)  GO:0005524 (>75 %)  GO:0008872 (>75 %)  GO:0016301 (>75 %)  GO:0016772 (>75 %)  GO:0016773 (>75 %)  GO:0016829 (>75 %)  GO:0016835 (>75 %)  GO:0016836 (>75 %)  GO:0030554 (>75 %)
SCOP : 51604 (>75 %)  51609 (>75 %)  56111 (>75 %)  56112 (>75 %)  88854 (>75 %)

Number of loops: 3

Average sequence ID (%) : 7.4 +/- 7.8
Average RMSD (Å) : 1.000 +/- 0.361

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 90-135

rho (°): 270-315

Consensus Sequence:	XXppXXXXc
(φψ)-conformation:	aallappaa

Pattern:	[GIV]	x	[ADE]	[AFL]	x	x	x	[GT]	[DR]	[DHQ]	[AQT]	x	[DPT]	x	[GK]	x	[AV]	[LTV]	x	[LMY]	[AEG]	x	x	x	[AL]	[ADK]	[GLV]
Conservation:	-0.692	0.154	0.492	-0.354	-0.354	-0.692	-2.214	1.320	1.320	1.169	-0.015	-0.861	0.323	-1.199	1.320	0.661	1.664	0.492	-1.199	0.999	-0.184	-0.861	0.477	-0.861	0.985	-0.523	-1.368

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1qo8_A_184	1qo8	A	188	214	IEDAMKGGRQQNDIKLVTILAEQSADG	HHHHHHHTTT-S-HHHHHHHHHHHHHH	aaaaaaaalvaxxaaaaaaaaaaaaaa
1ujn_A_231	1ujn	A	234	260	GHALEAQTRHALPHGMAVAYGLLYAAL	HHHHHHHTTT-S-HHHHHHHHHHHHHH	aaaaaaaavvaxwaaaaaaaaaaaaaa
1vin_*_275	1vin	-	275	301	VAEFVYITDDTYTKKQVLRMEHLVLKV	HHHHHHHTTTSS-HHHHHHHHHHHHHH	aaaaaaaallabxaaaaaaaaaaaaaa

Clusters included in this Subclass