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Information on SUBCLASS 5.16.1
Subclass Accession number: 2463
Subclass: 5.16.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1 (>50 %)  2 (>75 %)  7 (>50 %)  
GO : GO:0004672 (>50 %)  GO:0005489 (>75 %)  GO:0016301 (>50 %)  GO:0016773 (>50 %)  GO:0016829 (>75 %)  
SCOP : 48149 (>75 %)  48150 (>75 %)  54235 (>75 %)  54292 (>75 %)  54293 (>75 %)  56111 (>50 %)  56112 (>50 %)  88854 (>50 %)  
Number of loops: 5

Average sequence ID (%) : 35.0 +/- 27.2
Average RMSD (Å) : 0.260 +/- 0.055

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XphXGhGXp
(φψ)-conformation: aappgbbaa
Pattern: x[DKN]x[L]x[krt][FLV][PST][G][IV][G][PRT][KSW][ATV][A][DNR]x[FILV][ACV]x
Conservation:-0.890-0.073-1.0201.115-0.739-0.895-0.1800.0312.2130.8422.213-0.524-0.579-0.2091.115-0.023-0.994-0.136-0.228-1.040
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bpy_A_921bpy   A97116INFLTRVSGIGPSAARKFVDHHHHTTSTT--HHHHHHHHHaaaaaaxpgbbaaaaaaaaa
1jn3_A_921jn3   A97116INFLTRVTGIGPSAARKLVDHHHHTTSTT--HHHHHHHHHaaaaaaxpgbxaaaaaaaaa
1m3q_A_2331m3q   A237256HKALCILPGVGTKVADCICLHHHHTTSTT--HHHHHHHHHaaaaaaxxvbbaaaaaaaaa
1mpg_A_2021mpg   A206225MKTLQTFPGIGRWTANYFALHHHHTTSTT--HHHHHHHHHaaaaaaxxvbxaaaaaaaaa
1orn_A_1091orn   A109128RDELMKLPGVGRKTANVVVSHHHHTTSTT--HHHHHHHHHaaaaaaxxvbbaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m3q_A_2331m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE K - 249
1m3q_A_2331m3q   A     ANG8-AMINOGUANINE K - 249
1m3q_A_2331m3q   A     ANG8-AMINOGUANINE C - 253
1m3q_A_2331m3q   A     ANG8-AMINOGUANINE L - 256
1m3q_A_2331m3q   A     ANG8-AMINOGUANINE M - 257
1orn_A_1091orn   A     PEDPENTANE-3,4-DIOL-5-PHOSPHATE K - 121
1orn_A_1091orn   A     PEDPENTANE-3,4-DIOL-5-PHOSPHATE T - 122

Clusters included in this Subclass
CLUSTER: HH.6.40
CLUSTER: HH.8.7