ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.34.1

Subclass Accession number: 2481
Subclass: 5.34.1

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0003712 (>50 %) GO:0003714 (>50 %) GO:0005515 (>50 %) GO:0005524 (>50 %) GO:0008134 (>50 %) GO:0016301 (>50 %) GO:0016772 (>50 %)
SCOP : 47615 (>50 %) 47616 (>50 %) 47617 (>50 %) 54210 (>50 %) 54211 (>50 %) 54232 (>50 %)

Number of loops: 3

Average sequence ID (%) : 10.7 +/- 11.0
Average RMSD (Å) : 0.967 +/- 0.321

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XhXXXXXXX
(φψ)-conformation:	aalpappaa

Pattern:	[AL]	[AEL]	x	[GV]	x	[AKV]	[AIL]	x	x	[EL]	[AFY]	[GNQ]	[EL]	[DNP]	x	[GPS]	x	x	[ET]	[ILV]	x	[QR]	[ILV]	[AGL]	[QRT]	[KQ]	[FGT]	[ES]
Conservation:	0.473	-1.089	-1.211	-0.259	-0.845	-0.601	0.010	-1.455	-0.723	-0.405	0.376	0.132	-0.405	0.376	0.122	-0.112	-0.723	-0.479	1.059	1.474	-0.845	2.065	1.474	-0.967	0.132	2.052	-1.089	1.463

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fi4_A_120	1fi4	A	126	153	AALVSAIAKLYQLPQSTSEISRIARKGS	HHHHHHHHHHTT--S-HHHHHHHHHHHH	aaaaaaaaaaalxappaaaaaaaaaaaa
1mzb_A_35	1mzb	A	35	62	AEDVYKALMEAGEDVGLATVYRVLTQFE	HHHHHHHHHHTT----HHHHHHHHHHHH	aaaaaaaaaaalxabxaaaaaaaaaaaa
1pie_A_138	1pie	A	144	171	LLVGVVLDDLFNLNVPRLELVQLGQKTE	HHHHHHHHHHTT----HHHHHHHHHHHH	aaaaaaaaaaalxaxxaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass