Logo
Information on SUBCLASS 6.13.1
Subclass Accession number: 2499
Subclass: 6.13.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.5 (>75 %)  2.5.1 (>75 %)  2.5.1.18 (>75 %)  3.2 (>75 %)  3.2.1 (>75 %)  3.2.1.2
GO : GO:0004364 (>75 %)  GO:0004553 (>50 %)  GO:0016160 (>50 %)  GO:0016765 (>75 %)  GO:0016798 (>50 %)  
SCOP : 47615 (>75 %)  47616 (>75 %)  47617 (>75 %)  51445 (>75 %)  51446 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 29.9 +/- 20.3
Average RMSD (Å) : 0.500 +/- 0.183

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: pXchXGXppX
(φψ)-conformation: aalaaeabaa
Pattern: [S]x[AC][I][AIV][R][HY][ILM][AS][DKR][EK][FHY]x[ILM]x[G][EGK][CST][EPS][EKL][EN][EKRY][AFY][ENRY][AIV][DES][EKM][IL]xx[AGQT][ALV]x[D][IL][EFHR][HNY][DEGK][FVY]
Conservation:1.141-0.2120.3261.141-0.4361.8031.7910.2470.307-0.2840.6850.681-0.0220.256-1.3412.465-0.756-0.268-0.521-1.1890.472-0.845-0.050-1.052-0.1530.111-0.7220.480-1.507-1.220-1.176-0.494-0.6452.4650.587-1.0930.244-0.845-0.369
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dug_A_671dug   A67105SMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVHHHHHHHHHHHTT-S-SSHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaalaaeabaaaaaaaaaaaaaaaaaaaaa
1oe8_A_711oe8   A71109SLAIARYMAKKHHMMGGTEEEYYNVEKLIGQAEDLEHEYHHHHHHHHHHHTT-S-SSHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaalaaeabaaaaaaaaaaaaaaaaaaaaa
1okt_A_721okt   A72110SQAIVRYLSKKYNICGESELNEFYADMIFCGVQDIHYKFHHHHHHHHHHHTT-S-SSHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaalaaeabaaaaaaaaaaaaaaaaaaaaa
2gsq_*_632gsq   -63101SMCIARHLAREFGLDGKTSLEKYRVDEITETLQDIFNDVHHHHHHHHHHHTT-S-SSHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaavaaeaxaaaaaaaaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dug_A_671dug   A     GSHGLUTHATHIONE S - 67
1dug_A_671dug   A     GSHGLUTHATHIONE M - 68
1dug_A_671dug   A     GSHGLUTHATHIONE G - 96
1dug_A_671dug   A     GSHGLUTHATHIONE A - 97
1dug_A_671dug   A     GSHGLUTHATHIONE D - 100
1dug_A_671dug   A     GSHGLUTHATHIONE Y - 103
1oe8_A_711oe8   A     GSHGLUTHATHIONE S - 71
1oe8_A_711oe8   A     GSHGLUTHATHIONE L - 72
1oe8_A_711oe8   A     GSHGLUTHATHIONE G - 100
1oe8_A_711oe8   A     GSHGLUTHATHIONE Q - 101
1oe8_A_711oe8   A     GSHGLUTHATHIONE D - 104
1okt_A_721okt   A     FMTFORMIC ACID S - 72
1okt_A_721okt   A     FMTFORMIC ACID Q - 73
1okt_A_721okt   A     FMTFORMIC ACID I - 75
2gsq_*_632gsq   *     GBIS-(3-IODOBENZYL)GLUTATHIONE S - 63
2gsq_*_632gsq   *     GBIS-(3-IODOBENZYL)GLUTATHIONE M - 64
2gsq_*_632gsq   *     GBIS-(3-IODOBENZYL)GLUTATHIONE I - 66
2gsq_*_632gsq   *     GBIS-(3-IODOBENZYL)GLUTATHIONE F - 98
2gsq_*_632gsq   *     GBIS-(3-IODOBENZYL)GLUTATHIONE N - 99
2gsq_*_632gsq   *     GBIS-(3-IODOBENZYL)GLUTATHIONE V - 102
2gsq_*_632gsq   *     GBIS-(3-IODOBENZYL)GLUTATHIONE K - 103
2gsq_*_632gsq   *     GBIS-(3-IODOBENZYL)GLUTATHIONE I - 104
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oe8_A_711oe8   A AC1GSH BINDING SITE FOR CHAIN AS - 71
1oe8_A_711oe8   A AC2GSH BINDING SITE FOR CHAIN BD - 104
1okt_A_721okt   A AC1FMT BINDING SITE FOR CHAIN AS - 72
1okt_A_721okt   A AC1FMT BINDING SITE FOR CHAIN AQ - 73

Clusters included in this Subclass
CLUSTER: HH.6.62