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Information on SUBCLASS 3.17.1
Subclass Accession number: 254
Subclass: 3.17.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1.1 (>50 %)  1.1.1 (>50 %)  1.1.1.27
GO : GO:0000287 (>75 %)  GO:0004457 (>75 %)  GO:0004459 (>75 %)  GO:0016614 (>75 %)  GO:0016616 (>75 %)  
SCOP : 56326 (>75 %)  56327 (>75 %)  56328 (>75 %)  
 Number of loops: 9

Average sequence ID (%) : 20.1 +/- 18.2
Average RMSD (Å) : 0.656 +/- 0.194

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpGXphX
(φψ)-conformation: aagppbb
Pattern: xxx[AFLY]x[AEKNQT][dnqst][G]xx[ILV]x
Conservation:-0.646-0.549-0.455-0.050-0.420-0.200-0.2582.832-0.617-0.4721.055-0.220
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e5k_A_581e5k   A5869QEIYQASGLKVIHHHHHTTS--EEaaaaaaavxxbb
1fe0_A_481fe0   A5263LATLKKTGKTVSHHHHHTTTS-EEaaaaaaavxxbb
1fts_*_3061fts   -314325ARQFEQQGKSVMHHHHHTTT--EEaaaaaaavbxbb
1ibj_A_2361ibj   A240251SEMAHAQGALVLHHHHHTTT-EEEaaaaaaavbxbb
1jnd_A_1661jnd   A181192KDSLRADGFLLSHHHHHTTT-EEEaaaaaaavxxbb
1o20_A_1261o20   A132143TILALKSGNTILHHHHHHTT--EEaaaaaaavbxbb
1okk_D_1151okk   D123134GRYYQNLGKKVMHHHHHTTT--EEaaaaaaavxxbb
1tht_A_521tht   A5566AEYLSTNGFHVFHHHHHTTT--EEaaaaaaagxxbb
2fok_A_1602fok   A165176ILTLLEDGQHLTHHHHHTT---EEaaaaaaavpbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fe0_A_481fe0   A     CDCADMIUM ION K - 60
1ibj_A_2361ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 253
1o20_A_1261o20   A     MSESELENOMETHIONINE N - 126
1o20_A_1261o20   A     MSESELENOMETHIONINE V - 129
1o20_A_1261o20   A     MSESELENOMETHIONINE E - 130
1o20_A_1261o20   A     MSESELENOMETHIONINE I - 133
1o20_A_1261o20   A     MSESELENOMETHIONINE L - 143
1o20_A_1261o20   A     MSESELENOMETHIONINE L - 144
1o20_A_1261o20   A     MSESELENOMETHIONINE R - 145
1okk_D_1151okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER K - 115
1okk_D_1151okk   D     MO3MAGNESIUM ION, 3 WATERS COORDINATED K - 115
1okk_D_1151okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 116
1okk_D_1151okk   D     MO3MAGNESIUM ION, 3 WATERS COORDINATED T - 116
1okk_D_1151okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 117
1okk_D_1151okk   D     MO3MAGNESIUM ION, 3 WATERS COORDINATED T - 117
1okk_D_1151okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 118
1okk_D_1151okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER K - 121

Clusters included in this Subclass
CLUSTER: HE.5.43
CLUSTER: HE.6.85