ArchDB - Biological DataBase of Protein Loops

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Information on SUBCLASS 0.1.11

Subclass Accession number: 2561
Subclass: 0.1.11

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 13

Average sequence ID (%) : 6.8 +/- 11.3
Average RMSD (Å) : 0.508 +/- 0.222

Consensus geometry

d (Å): 7

delta (°): 0-45

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	XpXX
(φψ)-conformation:	bbaa

Pattern:	x	x	x	[DEGKQST]	x	[adegkt]	[agikltv]	x	[dekry]
Conservation:	-1.000	-0.462	0.119	1.980	-0.687	0.257	-0.514	-1.298	0.605

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b24_A_78	1b24	A	81	89	RVSSKKLYY	EEE-HHHHH	bbxbaaaaa
1clc_*_290	1clc	-	292	300	VPWSSAATA	EEE-HHHHH	bpxbaaaaa
1e19_A_131	1e19	A	135	143	PFYDEETAK	EEE-HHHHH	xxbxaaaaa
1g99_A_103	1g99	A	103	111	ALYDEGVEK	EE--HHHHH	bxxbaaaaa
1gs5_A_195	1gs5	A	195	202	.EMTAAKAE	.EE-HHHHH	.bbbaaaaa
1iq8_A_489	1iq8	A	489	497	LTLGIEGAK	EEE-HHHHH	xxxbaaaaa
1kfu_L_591	1kfu	L	591	598	.KLGLKEFY	.EE-SHHHH	.bbxaaaNa
1m1n_A_148	1m1n	A	150	158	VQSECPIGL	EEE-THHHH	bxxxaaaaa
1n8i_A_629	1n8i	A	630	638	LMEDRATLR	EEE-HHHHH	bxbbaaaaa
1o8u_A_39	1o8u	A	39	46	.VWTSTAHD	.EE-HHHHH	.bxbaaaaa
1sh0_A_169	1sh0	A	169	176	.LVKTDKIY	.EE-THHHH	.xbpaaaaa
1ufh_A_4	1ufh	A	6	14	TPMQTEEFR	EE--HHHHH	bpxxaaaaa
1ygs_*_407	1ygs	-	408	416	FVQSYYLDR	EEE-HHHHH	bbbbaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1b24_A_78	1b24	A	MSESELENOMETHIONINE	L - 80
1b24_A_78	1b24	A	MSESELENOMETHIONINE	V - 82
1b24_A_78	1b24	A	MSESELENOMETHIONINE	L - 87
1b24_A_78	1b24	A	MSESELENOMETHIONINE	Y - 89
1b24_A_78	1b24	A	MSESELENOMETHIONINE	Y - 90
1b24_A_78	1b24	A	MSESELENOMETHIONINE	F - 91
1b24_A_78	1b24	A	MSESELENOMETHIONINE	A - 92
1clc_*_290	1clc	*	CACALCIUM ION	A - 297
1m1n_A_148	1m1n	A	CLFFE(8)-S(7) CLUSTER	S - 152
1m1n_A_148	1m1n	A	CLFFE(8)-S(7) CLUSTER	E - 153
1m1n_A_148	1m1n	A	CLFFE(8)-S(7) CLUSTER	C - 154
1m1n_A_148	1m1n	A	CLFFE(8)-S(7) CLUSTER	P - 155
1n8i_A_629	1n8i	A	MGMAGNESIUM ION	D - 633
1n8i_A_629	1n8i	A	GLVGLYOXYLIC ACID	D - 633
1n8i_A_629	1n8i	A	MGMAGNESIUM ION	A - 635
1n8i_A_629	1n8i	A	GLVGLYOXYLIC ACID	A - 635

Clusters included in this Subclass

CLUSTER: EH.1.38