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Information on SUBCLASS 1.1.48
Subclass Accession number: 2677
Subclass: 1.1.48 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 10.6 +/- 12.2
Average RMSD (Å) : 0.600 +/- 0.100

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXXXX
(φψ)-conformation: bbpaa
Pattern: x[EKS][RW]x[ACV][AFI][FV][KV]x[ADT][AEP][AE][DEK]x[EK][ER]xxx[CDE][ILV]x
Conservation:-1.0600.4090.802-1.0600.276-0.6590.6650.307-0.526-0.526-0.3920.8540.943-1.0602.0951.548-1.060-1.194-1.327-0.3921.478-0.121
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1j5y_A_711j5y   A7192VSRLVAVKHAPEEIKEELLCVVEEEEEEEE--GGGHHHHHHHHHbbbxbxbbbxaaaaaaaaaaaa
1kr4_A_501kr4   A5576KEWAAIFKTTEEKEKELYEELREEEEEEEE--GGGHHHHHHHHHbbbxbbbbbbaaaaaaaaaaaa
2dap_*_1932dap   -193214HKRQCFVVADAADHERIENDIREEEEEEEE--TTSHHHHHHHHHbbbbbbbbbxaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j5y_A_711j5y   A     MSESELENOMETHIONINE V - 71
1j5y_A_711j5y   A     MSESELENOMETHIONINE S - 72
1j5y_A_711j5y   A     MSESELENOMETHIONINE R - 73
1j5y_A_711j5y   A     MSESELENOMETHIONINE L - 74
1j5y_A_711j5y   A     MSESELENOMETHIONINE V - 75
1j5y_A_711j5y   A     NINICKEL (II) ION V - 77
1j5y_A_711j5y   A     NINICKEL (II) ION H - 79
1j5y_A_711j5y   A     MSESELENOMETHIONINE P - 81
1j5y_A_711j5y   A     MSESELENOMETHIONINE I - 84
1j5y_A_711j5y   A     NINICKEL (II) ION I - 84
1j5y_A_711j5y   A     MSESELENOMETHIONINE K - 85
1j5y_A_711j5y   A     NINICKEL (II) ION E - 87
1j5y_A_711j5y   A     NINICKEL (II) ION L - 88
1kr4_A_501kr4   A     MSESELENOMETHIONINE K - 62
1kr4_A_501kr4   A     MSESELENOMETHIONINE T - 63
1kr4_A_501kr4   A     MSESELENOMETHIONINE T - 64
1kr4_A_501kr4   A     MSESELENOMETHIONINE E - 65
2dap_*_1932dap   *     API2,6-DIAMINOPIMELIC ACID R - 195
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
2dap_*_1932dap   * DAPDIAMINOPIMELATE BINDING SITE.R - 195

Clusters included in this Subclass
CLUSTER: EH.6.298