Logo
Information on SUBCLASS 1.2.4
Subclass Accession number: 2702
Subclass: 1.2.4 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 21

Average sequence ID (%) : 12.6 +/- 14.7
Average RMSD (Å) : 0.333 +/- 0.097

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: hXXpX
(φψ)-conformation: bpaaa
Pattern: [afilvy]x[afitv]xx[adeknqst]x[ailmvw]x[adekqrt][acfklmv]
Conservation:1.772-0.5730.657-0.542-1.0210.991-1.3721.211-0.461-0.315-0.349
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1amf_*_41amf   -717VFAAASLTNAMEEEEGGGHHHHbbbpaaaaaaa
1atg_*_31atg   -515VVTATNFLGTLEEEEGGGHHHHbbbpaaaaaaa
1aye_*_521aye   -5464VRVPFVNVQAVEEE-GGGHHHHbxbwaaaaaaa
1cbf_*_2191cbf   -221231VRTTVKDLDDAEEEEGGGHHHHbbbbaaaaaaa
1crz_A_1071crz   A113123YKVNKQWLRYAEEE-GGGHHHHbbbxaaaaaaa
1e19_A_2911e19   A293303IIAHLEKAVEAEEEEGGGHHHHbbbxaaaaaaa
1gnk_A_541gnk   A6373VAIADDQLDEVEEE-GGGHHHHbxbxaaaaaaa
1hwu_A_551hwu   A6373VVVDDKVVEQAEEE-GGGHHHHbbbxaaaaaaa
1iib_A_341iib   A3747EAFPETLAGEKEEEEGGGHHHHbbbxaaaaaaa
1j5y_A_711j5y   A7787VKHAPEEIKEEEE--GGGHHHHbbbxaaaaaaa
1kfs_A_8831kfs   A886896FEVHKDDVDAVEEEETTTHHHHbbbxaaaaaaa
1l0l_A_951l0l   A99109IKALSKDLPKAEEEEGGGHHHHbxbpaaaaaaa
1nk4_A_8311nk4   A834844LEAPKEEMERLEEEEGGGHHHHbbbwaaaaaaa
1nkx_A_5961nkx   A597607VVSRSDRAAHVEEEEGGGHHHHxbbxaaaaaaa
1pie_A_3531pie   A356366ALVAHDNVSAFEEEEGGGHHHHbbbpaaaaaaa
1q2y_A_1021q2y   A104114LNAQTQAVPFYEEEEGGGHHHHbxbxaaaaaaa
1qtm_A_7861qtm   A789799LEAPKERAEAVEEEETTTHHHHbbbwaaaaaaa
1r94_A_601r94   A6272VVVDGKSLQFLEEEEGGGHHHHbbbpaaaaaaa
1rpm_A_8801rpm   A880888..IRVADLLQH..EETTTHHHH..bxaaaaaaa
1uku_A_441uku   A5565LKTREDLWEELEEE-GGGHHHHbbbxaaaaaaa
2pii_*_562pii   -6373IVVPDDIVDTCEEE-GGGHHHHbbbxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1amf_*_41amf   *     MOOMOLYBDATE ION A - 10
1amf_*_41amf   *     MOOMOLYBDATE ION A - 11
1amf_*_41amf   *     MOOMOLYBDATE ION S - 12
1amf_*_41amf   *     MOOMOLYBDATE ION L - 13
1atg_*_31atg   *     EDO1,2-ETHANEDIOL V - 6
1atg_*_31atg   *     WO4TUNGSTATE(VI)ION A - 8
1atg_*_31atg   *     WO4TUNGSTATE(VI)ION T - 9
1atg_*_31atg   *     WO4TUNGSTATE(VI)ION N - 10
1atg_*_31atg   *     WO4TUNGSTATE(VI)ION F - 11
1atg_*_31atg   *     EDO1,2-ETHANEDIOL Q - 17
1j5y_A_711j5y   A     MSESELENOMETHIONINE V - 71
1j5y_A_711j5y   A     MSESELENOMETHIONINE S - 72
1j5y_A_711j5y   A     MSESELENOMETHIONINE R - 73
1j5y_A_711j5y   A     MSESELENOMETHIONINE L - 74
1j5y_A_711j5y   A     MSESELENOMETHIONINE V - 75
1j5y_A_711j5y   A     NINICKEL (II) ION V - 77
1j5y_A_711j5y   A     NINICKEL (II) ION H - 79
1j5y_A_711j5y   A     MSESELENOMETHIONINE P - 81
1j5y_A_711j5y   A     MSESELENOMETHIONINE I - 84
1j5y_A_711j5y   A     NINICKEL (II) ION I - 84
1j5y_A_711j5y   A     MSESELENOMETHIONINE K - 85
1j5y_A_711j5y   A     NINICKEL (II) ION E - 87
1j5y_A_711j5y   A     NINICKEL (II) ION L - 88
1kfs_A_8831kfs   A     ZNZINC ION H - 901
1kfs_A_8831kfs   A     ZNZINC ION E - 905
1kfs_A_8831kfs   A     ZNZINC ION N - 906
1nkx_A_5961nkx   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 609
1nkx_A_5961nkx   A     NAGN-ACETYL-D-GLUCOSAMINE H - 613
1nkx_A_5961nkx   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 614
1nkx_A_5961nkx   A     NAGN-ACETYL-D-GLUCOSAMINE L - 617
1nkx_A_5961nkx   A     NAGN-ACETYL-D-GLUCOSAMINE F - 618
1qtm_A_7861qtm   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE E - 786
1qtm_A_7861qtm   A     MGMAGNESIUM ION E - 786
1uku_A_441uku   A     CUCOPPER (II) ION D - 48
1uku_A_441uku   A     CUCOPPER (II) ION K - 49
1uku_A_441uku   A     CUCOPPER (II) ION E - 50
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1amf_*_41amf   * MO4MOLYBDATE BINDING SITE.S - 12
1atg_*_31atg   * MOBANION-BINDING POCKET LOCATED AT THE INTERFACE BETWEEN THE 2 DOMAINS OF THE PROTEIN. BINDS BOTH MOLYBDATE AND TUNGSTATE.T - 9
1atg_*_31atg   * MOBANION-BINDING POCKET LOCATED AT THE INTERFACE BETWEEN THE 2 DOMAINS OF THE PROTEIN. BINDS BOTH MOLYBDATE AND TUNGSTATE.N - 10

Clusters included in this Subclass
CLUSTER: EH.3.30
CLUSTER: EH.4.235
CLUSTER: EH.4.62