ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.2.12

Subclass Accession number: 2710
Subclass: 1.2.12

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 27.0 +/- 21.3
Average RMSD (Å) : 0.267 +/- 0.115

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	SGphh
(φψ)-conformation:	beaaa

Pattern:	[G]	[LV]	[S]	[G]	[KRT]	[AP]	[IL]	[QR]	x	[IKL]	[AS]	[LT]	[EQR]	[AIT]	[IV]	[RT]	[ERT]	[ILM]	x	x	[AEL]
Conservation:	2.254	0.137	1.020	2.254	-0.420	0.231	0.431	0.513	-1.380	-0.968	0.137	-0.224	-0.008	-0.831	0.726	-0.129	-0.694	0.129	-0.831	-1.105	-1.242

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d3g_A_303	1d3g	A	303	323	GLSGKPLRDLSTQTIREMYAL	EEEEGGGHHHHHHHHHHHHHH	xxbeaaaaaaaaaaaaaaaaa
1f76_A_265	1f76	A	265	285	GLSGRPLQLKSTEIIRRLSLE	EEEEGGGHHHHHHHHHHHHHH	xxbeaaaaaaaaaaaaaaaaa
1h7w_A_763	1h7w	A	764	784	GVSGTAIRPIALRAVTTIARA	EEESGGGHHHHHHHHHHHHHH	bxbeaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d3g_A_303	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	G - 303
1d3g_A_303	1d3g	A	OROOROTIC ACID	G - 303
1d3g_A_303	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	L - 304
1d3g_A_303	1d3g	A	OROOROTIC ACID	L - 304
1d3g_A_303	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	S - 305
1d3g_A_303	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	G - 306
1d3g_A_303	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	K - 307
1d3g_A_303	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	L - 309
1d3g_A_303	1d3g	A	ACTACETATE ION	D - 311
1d3g_A_303	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	S - 313
1d3g_A_303	1d3g	A	ACTACETATE ION	T - 314
1d3g_A_303	1d3g	A	ACTACETATE ION	Q - 315
1d3g_A_303	1d3g	A	ACTACETATE ION	R - 318
1f76_A_265	1f76	A	FMNFLAVIN MONONUCLEOTIDE	G - 265
1f76_A_265	1f76	A	OROOROTIC ACID	G - 265
1f76_A_265	1f76	A	FMNFLAVIN MONONUCLEOTIDE	L - 266
1f76_A_265	1f76	A	OROOROTIC ACID	L - 266
1f76_A_265	1f76	A	FMNFLAVIN MONONUCLEOTIDE	S - 267
1f76_A_265	1f76	A	FMNFLAVIN MONONUCLEOTIDE	G - 268
1f76_A_265	1f76	A	FMNFLAVIN MONONUCLEOTIDE	R - 269
1f76_A_265	1f76	A	FMNFLAVIN MONONUCLEOTIDE	L - 271
1h7w_A_763	1h7w	A	FMNFLAVIN MONONUCLEOTIDE	G - 764
1h7w_A_763	1h7w	A	FMNFLAVIN MONONUCLEOTIDE	V - 765
1h7w_A_763	1h7w	A	FMNFLAVIN MONONUCLEOTIDE	S - 766
1h7w_A_763	1h7w	A	FMNFLAVIN MONONUCLEOTIDE	G - 767
1h7w_A_763	1h7w	A	FMNFLAVIN MONONUCLEOTIDE	T - 768
1h7w_A_763	1h7w	A	FMNFLAVIN MONONUCLEOTIDE	I - 770

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h7w_A_763	1h7w	A	AC5FMN BINDING SITE FOR CHAIN A	G - 767

Clusters included in this Subclass

CLUSTER: EH.3.259