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Information on SUBCLASS 4.2.6
Subclass Accession number: 276
Subclass: 4.2.6 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : - (>75 %)  
GO : GO:0046914 (>50 %)  
SCOP : 53849 (>50 %)  53850 (>50 %)  53851 (>50 %)  
Number of loops: 3

Average sequence ID (%) : 13.7 +/- 14.8
Average RMSD (Å) : 0.433 +/- 0.153

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XpGphphX
(φψ)-conformation: aalababb
Pattern: x[AGS][AQT][AGR][AIL][STY][AKM][ALV][AD][EKN][G][DE][LVY][DE][AIY][ILT][GI]
Conservation:-0.580-0.037-0.503-0.580-0.347-0.503-0.658-0.347-0.2070.1182.9111.340-0.2701.540-0.735-0.270-0.872
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ii5_A_541ii5   A5470ISAGITAVAEGELDILIHHHHHHHHHTTS-SEEEaaaaaaaaaavababbb
1pda_*_1521pda   -152168VGTRLSKLDNGEYDAIIHHHHHHHHHTTS-SEEEaaaaaaaaaavababbb
1rxw_A_1521rxw   A153169EAQAAYMAAKGDVEYTGHHHHHHHHHTTSSSEEEaaaaaaaaaavababxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ii5_A_541ii5   A     GLUGLUTAMIC ACID I - 54
1ii5_A_541ii5   A     GLUGLUTAMIC ACID P - 72
1ii5_A_541ii5   A     GLUGLUTAMIC ACID I - 73
1ii5_A_541ii5   A     GLUGLUTAMIC ACID S - 74
1pda_*_1521pda   *     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID V - 152
1pda_*_1521pda   *     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID G - 153
1pda_*_1521pda   *     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID R - 155
1pda_*_1521pda   *     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID I - 168
1pda_*_1521pda   *     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID L - 169

Clusters included in this Subclass
CLUSTER: HE.4.179