ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.18

Subclass Accession number: 2767
Subclass: 2.1.18

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 11.1 +/- 16.5
Average RMSD (Å) : 0.644 +/- 0.296

Consensus geometry

d (Å): 7

delta (°): 0-45

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	XXpphp
(φψ)-conformation:	bbabaa

Pattern:	x	[filtv]	[desty]	[ades]	[afglp]	[cdeknsy]	x	[FHLV]	x
Conservation:	-0.023	0.752	0.220	1.112	-1.369	-0.904	-0.677	1.585	-0.697

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b77_A_52	1b77	A	53	61	ALYDLNSFL	EES-HHHHH	xbabaaaaa
1czd_A_1052	1czd	A	1053	1061	AIYDLNGFL	EES-HHHHH	bbabaaaaa
1dmt_A_342	1dmt	A	344	352	VVYAPEYLT	EES-HHHHH	bxabaaaaa
1fiu_A_240	1fiu	A	242	250	YHFALYELE	EETTHHHHH	bxabaaaaa
1g13_A_76	1g13	A	76	84	TFEHFCDVL	EETTHHHHH	bbabaaaaa
1l1s_A_91	1l1s	A	92	100	VVSSGVGHI	EES-HHHHH	bbabaaaaa
1ltz_A_240	1ltz	A	243	251	VIDSFKQLF	EES-HHHHH	bxabaaaaa
1plq_*_2	1plq	-	5	13	KFEEASLFK	EESSHHHHH	bxabaaaaa
2ts1_*_15	2ts1	-	15	23	QTTDEDGLR	EES-HHHHH	bbabaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1g13_A_76	1g13	A	MSESELENOMETHIONINE	C - 81
1g13_A_76	1g13	A	MSESELENOMETHIONINE	D - 82
1g13_A_76	1g13	A	MSESELENOMETHIONINE	V - 83
1g13_A_76	1g13	A	MSESELENOMETHIONINE	L - 84
1plq_*_2	1plq	*	HGMERCURY (II) ION	L - 2
1plq_*_2	1plq	*	HGMERCURY (II) ION	E - 3
1plq_*_2	1plq	*	HGMERCURY (II) ION	D - 17
1plq_*_2	1plq	*	HGMERCURY (II) ION	G - 18
1plq_*_2	1plq	*	HGMERCURY (II) ION	F - 19

Clusters included in this Subclass

CLUSTER: EH.3.78