Logo
Information on SUBCLASS 2.6.3
Subclass Accession number: 2848
Subclass: 2.6.3 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 7.9 +/- 12.5
Average RMSD (Å) : 0.425 +/- 0.046

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XhpXXp
(φψ)-conformation: bbplaa
Pattern: [AIKLV]x[FGIKLMV][hkqrs][ADEGKNQ]x[ADKNS]xx
Conservation:0.765-1.193-0.3890.7870.6530.2921.410-1.243-1.083
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1byl_A_631byl   A6674VWVRGLDELEEES-HHHHbbbxvaaaa
1e8c_A_831e8c   A8492IYLSQLNEREEETTHHHHbxbxlaaaa
1fg7_A_2991fg7   A302310ARFKASSAVEEETTHHHHbxbxlaaaa
1h7s_A_3431h7s   A343351ILLQEEKLLEEETTHHHHxbbplaaaa
1io2_A_1271io2   A129137VAKHKADDIEEETTHHHHbbbxlaaaa
1j54_A_941j54   A95103LVIHNAAFDEEETTHHHHxbbxvaaaa
1kfs_A_4161kfs   A416424KVGQNLKYDEEESSHHHHbbbbvaaaa
1nk4_A_3671nk4   A368376KSMFDSKRAEEESSHHHHbbbbvaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e8c_A_831e8c   A     MSESELENOMETHIONINE V - 83
1e8c_A_831e8c   A     MSESELENOMETHIONINE Y - 85
1e8c_A_831e8c   A     UAGURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE N - 90
1e8c_A_831e8c   A     MSESELENOMETHIONINE L - 93
1e8c_A_831e8c   A     MSESELENOMETHIONINE L - 96
1e8c_A_831e8c   A     MSESELENOMETHIONINE A - 97
1e8c_A_831e8c   A     MSESELENOMETHIONINE F - 100
1fg7_A_2991fg7   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE Y - 299
1h7s_A_3431h7s   A     MSESELENOMETHIONINE K - 356
1h7s_A_3431h7s   A     MSESELENOMETHIONINE T - 357
1h7s_A_3431h7s   A     MSESELENOMETHIONINE S - 358
1h7s_A_3431h7s   A     MSESELENOMETHIONINE L - 359
1h7s_A_3431h7s   A     MSESELENOMETHIONINE I - 360
1j54_A_941j54   A     MNMANGANESE (II) ION I - 97
1j54_A_941j54   A     MNMANGANESE (II) ION H - 98
1j54_A_941j54   A     TMPTHYMIDINE-5'-PHOSPHATE H - 98
1j54_A_941j54   A     TMPTHYMIDINE-5'-PHOSPHATE N - 99
1j54_A_941j54   A     EGLETHYLENE GLYCOL N - 99
1j54_A_941j54   A     MNMANGANESE (II) ION F - 102
1j54_A_941j54   A     TMPTHYMIDINE-5'-PHOSPHATE F - 102
1j54_A_941j54   A     EGLETHYLENE GLYCOL F - 102
1j54_A_941j54   A     MNMANGANESE (II) ION D - 103
1j54_A_941j54   A     TMPTHYMIDINE-5'-PHOSPHATE D - 103
1kfs_A_4161kfs   A     MGMAGNESIUM ION Q - 419
1kfs_A_4161kfs   A     MGMAGNESIUM ION N - 420
1kfs_A_4161kfs   A     MGMAGNESIUM ION Y - 423
1kfs_A_4161kfs   A     MGMAGNESIUM ION D - 424
1nk4_A_3671nk4   A     SUCSUCROSE F - 371
1nk4_A_3671nk4   A     SUCSUCROSE D - 372
1nk4_A_3671nk4   A     SUCSUCROSE K - 374
1nk4_A_3671nk4   A     SUCSUCROSE R - 375
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1kfs_A_4161kfs   A EXOEXONUCLEASE ACTIVE SITE.D - 424

Clusters included in this Subclass
CLUSTER: EH.3.103