ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.7.3

Subclass Accession number: 2855
Subclass: 2.7.3

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 28.9 +/- 26.2
Average RMSD (Å) : 0.575 +/- 0.359

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	XXXGXp
(φψ)-conformation:	bbaeaa

Pattern:	[il]	[FVY]	[FQ]	[GTV]	[rs]	[CG]	[AST]	[ST]	[EG]	[GS]	x	[KN]	[lw]	[AIV]	[AIL]
Conservation:	-1.064	0.041	0.092	-1.143	-1.701	0.884	0.148	1.494	0.246	1.077	-0.675	1.603	-1.127	0.285	-0.160

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1eg5_A_64	1eg5	A	64	78	IFFTSCATESINWIL	EEEES-HHHHHHHHH	bbbbaeaaaaaaaaa
1ixh_*_30	1ixh	-	32	46	NYQGIGSSGGVKQII	EEEE--HHHHHHHHH	bbbxaeaaaaaaaaa
1jf9_A_88	1jf9	A	88	102	LVFVRGTTEGINLVA	EEEESSHHHHHHHHH	bbxbaeaaaaaaaaa
1p3w_A_69	1p3w	A	69	83	IVFTSGATESDNLAI	EEEESSHHHHHHHHH	xbxbaeaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1eg5_A_64	1eg5	A	MSESELENOMETHIONINE	F - 66
1eg5_A_64	1eg5	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 68
1eg5_A_64	1eg5	A	PLPPYRIDOXAL-5'-PHOSPHATE	C - 69
1eg5_A_64	1eg5	A	PLPPYRIDOXAL-5'-PHOSPHATE	A - 70
1eg5_A_64	1eg5	A	PLPPYRIDOXAL-5'-PHOSPHATE	T - 71
1eg5_A_64	1eg5	A	PLPPYRIDOXAL-5'-PHOSPHATE	E - 72
1eg5_A_64	1eg5	A	PLPPYRIDOXAL-5'-PHOSPHATE	I - 74
1eg5_A_64	1eg5	A	MSESELENOMETHIONINE	L - 78
1ixh_*_30	1ixh	*	PO4PHOSPHATE ION	I - 36
1ixh_*_30	1ixh	*	PO4PHOSPHATE ION	G - 37
1ixh_*_30	1ixh	*	PO4PHOSPHATE ION	S - 38
1ixh_*_30	1ixh	*	PO4PHOSPHATE ION	S - 39
1jf9_A_88	1jf9	A	PLPPYRIDOXAL-5'-PHOSPHATE	R - 92
1jf9_A_88	1jf9	A	PLPPYRIDOXAL-5'-PHOSPHATE	G - 93
1jf9_A_88	1jf9	A	PLPPYRIDOXAL-5'-PHOSPHATE	T - 94
1jf9_A_88	1jf9	A	PLPPYRIDOXAL-5'-PHOSPHATE	T - 95
1jf9_A_88	1jf9	A	PLPPYRIDOXAL-5'-PHOSPHATE	E - 96
1jf9_A_88	1jf9	A	PLPPYRIDOXAL-5'-PHOSPHATE	I - 98
1p3w_A_69	1p3w	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 73
1p3w_A_69	1p3w	A	PLPPYRIDOXAL-5'-PHOSPHATE	G - 74
1p3w_A_69	1p3w	A	PLPPYRIDOXAL-5'-PHOSPHATE	A - 75
1p3w_A_69	1p3w	A	PLPPYRIDOXAL-5'-PHOSPHATE	T - 76
1p3w_A_69	1p3w	A	PLPPYRIDOXAL-5'-PHOSPHATE	E - 77
1p3w_A_69	1p3w	A	PLPPYRIDOXAL-5'-PHOSPHATE	D - 79

Clusters included in this Subclass

CLUSTER: EH.3.190