Logo
Information on SUBCLASS 4.6.1
Subclass Accession number: 289
Subclass: 4.6.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0016829 (>75 %)  
SCOP : 53382 (>75 %)  53383 (>75 %)  
 Number of loops: 11

Average sequence ID (%) : 24.8 +/- 22.9
Average RMSD (Å) : 0.673 +/- 0.420

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XhhpXpTX
(φψ)-conformation: aapbaaba
Pattern: [ehkr][ILMTV][aekrt][aekl][aly][ACIKLMTV][dgtv][DEGP][DHKNQR][RT]x[AGLV][ILV]
Conservation:0.2900.625-0.830-1.099-0.495-0.590-0.7210.2530.1181.984-0.948-0.4361.848
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b9h_A_1161b9h   A118130AVAAAVTPRTKVIHHHHH--TTEEEEaaaaapbaapabb
1bw0_A_1671bw0   A169181EIRRLKDDKTKLLHHHHH--TTEEEEaaaaapbaaxabb
1eg5_A_1291eg5   A131143ELEKLVDEDTFLVHHHHH--TTEEEEaaaaaxbaaxabb
1gde_A_1501gde   A152164ELKKYVTDKTRALHHHHH--TTEEEEaaaaaxbaaxabb
1ibj_A_2071ibj   A209221EVAAAIGPQTKLVHHHHH--SSEEEEaaaaaxxaaxabb
1ii2_A_2271ii2   A227239KTTLSADPHRNLIHHHHH--TTSEEEaaaaaxbaabxxa
1mdo_A_1171mdo   A119131HIEAAITPQTKAIHHHHH--TTEEEEaaaaaxbaaxabb
1o4s_A_1521o4s   A154166EVEGLLVGKTKAVHHHHT--TTEEEEaaaaaxbaaxabb
1os1_A_2541os1   A254266KTTLSTDPKRRLIHHHHH--TTSEEEaaaaaxbaabxxa
1p3w_A_1341p3w   A136148ELEAAMRDDTILVHHHHH--TTEEEEaaaaaxbaaxabb
1pmm_A_1911pmm   A193205RMIEACDENTIGVHHHHH--TTEEEEaaaaaxbaaxaeb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bw0_A_1671bw0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 184
1eg5_A_1291eg5   A     MSESELENOMETHIONINE L - 142
1eg5_A_1291eg5   A     MSESELENOMETHIONINE S - 144
1gde_A_1501gde   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 167
1mdo_A_1171mdo   A     MSESELENOMETHIONINE A - 123
1o4s_A_1521o4s   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 169
1os1_A_2541os1   A     MGMAGNESIUM ION K - 254
1os1_A_2541os1   A     CACALCIUM ION K - 254
1os1_A_2541os1   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 254
1os1_A_2541os1   A     MGMAGNESIUM ION T - 255
1os1_A_2541os1   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 255
1os1_A_2541os1   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 256
1os1_A_2541os1   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 257

Clusters included in this Subclass
CLUSTER: HE.4.33