ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.7.1

Subclass Accession number: 290
Subclass: 4.7.1

PSSM

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 18.5 +/- 17.4
Average RMSD (Å) : 0.840 +/- 0.288

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	XXhPpXhX
(φψ)-conformation:	aabaaabb

Pattern:	x	[CFLVY]	[agklv]	x	x	x	[PT]	[DEGKQ]	x	[flvy]	x	x
Conservation:	-0.287	0.157	-0.594	-0.435	-0.434	-0.205	2.859	0.745	-0.564	0.194	-0.744	-0.693

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aui_A_126	1aui	A	135	146	ALKILYPKTLFL	HHHHHSTTTEEE	aaaaabaaabbb
1c4x_A_111	1c4x	A	118	129	QLVVEAPERFDK	HHHHH-GGGEEE	aaaaabaaabax
1cjw_A_67	1cjw	A	72	83	HFLTLCPELSLG	HHHHH-GGGEEE	aaaaabaaabbb
1cvl_*_89	1cvl	-	95	106	YVAAVAPQLVAS	HHHHH-GGGEEE	aaaaabaaabab
1fxr_A_16	1fxr	A	16	27	SCVEIAPGAFAM	HHHHH-TTTEEE	aaaaabaaabbx
1iqz_A_16	1iqz	A	16	27	ACGAAAPDIYDY	HHHHH-TTTEEE	aaaaabaaabbb
1jk7_A_100	1jk7	A	109	120	AYKIKYPENFFL	HHHHHSTTTEEE	aaaaabaaabbb
1kic_A_13	1kic	A	20	31	VLLASNTEKVRL	HHHHH-TTTEEE	aaaaaxaaabbx
1qtr_A_114	1qtr	A	121	132	AYAQTHPERVSE	HHHTT-TTSEEE	aaaaabaaabab
1vjw_*_15	1vjw	-	15	26	VCENLCPDVFQL	HHHHH-TTTEEE	aaaaabaaabbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fxr_A_16	1fxr	A	FS4IRON/SULFUR CLUSTER	S - 16
1fxr_A_16	1fxr	A	FS4IRON/SULFUR CLUSTER	C - 17
1fxr_A_16	1fxr	A	FS4IRON/SULFUR CLUSTER	V - 18
1fxr_A_16	1fxr	A	FS4IRON/SULFUR CLUSTER	F - 25
1fxr_A_16	1fxr	A	FS4IRON/SULFUR CLUSTER	M - 27
1iqz_A_16	1iqz	A	FS4IRON/SULFUR CLUSTER	A - 16
1iqz_A_16	1iqz	A	FS4IRON/SULFUR CLUSTER	G - 18
1iqz_A_16	1iqz	A	SULSULFATE ANION	A - 20
1iqz_A_16	1iqz	A	FS4IRON/SULFUR CLUSTER	Y - 25
1iqz_A_16	1iqz	A	FS4IRON/SULFUR CLUSTER	Y - 27
1kic_A_13	1kic	A	NOSINOSINE	L - 13
1kic_A_13	1kic	A	CACALCIUM ION	D - 14
1kic_A_13	1kic	A	NOSINOSINE	D - 14
1kic_A_13	1kic	A	CACALCIUM ION	D - 15
1kic_A_13	1kic	A	NOSINOSINE	D - 15
1vjw_*_15	1vjw	*	FS4IRON/SULFUR CLUSTER	V - 15
1vjw_*_15	1vjw	*	FS4IRON/SULFUR CLUSTER	C - 16
1vjw_*_15	1vjw	*	FS4IRON/SULFUR CLUSTER	E - 17
1vjw_*_15	1vjw	*	FS4IRON/SULFUR CLUSTER	F - 24
1vjw_*_15	1vjw	*	FS4IRON/SULFUR CLUSTER	L - 26

Clusters included in this Subclass

CLUSTER: HE.3.54

CLUSTER: HE.5.30