Logo
Information on SUBCLASS 3.3.1
Subclass Accession number: 2903
Subclass: 3.3.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 64

Average sequence ID (%) : 9.2 +/- 12.5
Average RMSD (Å) : 0.713 +/- 0.203

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXhXpXp
(φψ)-conformation: bbpabaa
Pattern: xxx[acfgilpvwy]x[degknqrst]x[adegknqrst]xx
Conservation:-1.000-0.392-0.432-0.658-0.5951.572-1.3931.5250.0000.372
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a26_*_8951a26   -895904IYFADMVSKSEEEBSSHHHHbxbbabaaaa
1aiu_*_31aiu   -311.KQIESKTAF.EE--SHHHH.xxxabaaaa
1amf_*_541amf   -5463LFISADQKWMEEE-SSHHHHbbbbabaaaa
1bif_*_2971bif   -298307VFTSQMKRTIEEE-SSHHHHbbbxaxaaaa
1d2e_A_1211d2e   A124133HTDCPGHADYEEE-SSHHHHbbbbabaaaa
1dlj_A_3621dlj   A362370.VLVNDLENF.EE---HHHH.bxbaxaaaa
1e9l_A_1791e9l   A182191STGAGIIDVIEEE-SSHHHHbxbpabaaaa
1eix_A_171eix   A2029ALDYHNRDDAEE--SSHHHHxxbbabaaaa
1fiq_B_2351fiq   B236245WIQASTLKELEEE--SHHHHbbxxabaaaa
1fo8_A_3851fo8   A387396RVQYTGRDSFEEE--SHHHHbbxbabaaaa
1gc5_A_951gc5   A96105EWFVESEEVREEEB--HHHHbbxxaxaaaa
1gky_*_1641gky   -165174VIVNDDLDKAEEE-SSHHHHbbxxabaaaa
1gmu_A_711gmu   A7685VVRCDDPFMLEEE-S-HHHHbbxbabaaaa
1gnt_A_4861gnt   A489498DIAWYEQKAVEEE--SHHHHbxbbabaaaa
1goj_A_1751goj   A175183.IYVSSVQEV.EE--SHHHH.bxbabaaaa
1gtz_A_511gtz   A5362FRQSNHEGELEEE-S-HHHHbbbbabaaaa
1gx3_A_2331gx3   A236245HIRFDSAAQVEEE-SSHHHHbbbxabaaaa
1h05_A_461h05   A4958VRQSDSEAQLEEE-S-HHHHbbbbaxaaaa
1i6i_A_1841i6i   A184192.LAVTSYNDI.EE--SHHHH.bxbabaaaa
1ihu_A_4911ihu   A495504LVTLPETTPVEEE-SSHHHHxxbbabaaaa
1ile_*_4681ile   -468476.EAIGSFQEL.EE--SHHHH.bbxabaaaa
1itx_A_2471itx   A250259IASGASATYAEEE--SHHHHbbbxaxaaaa
1j6o_A_311j6o   A3241VNVGVNLEDSEEE-SSHHHHbxbxabaaaa
1jr7_A_2481jr7   A248256.VQPKDFEEG.EE--SHHHH.xbpabaaaa
1jyk_A_2141jyk   A214223IYEIDSVQDYEEE--SHHHHbbxbabaaaa
1k87_A_4801k87   A483492QFATHNAHTLEEE---HHHHbxxbaxaaaa
1kek_A_1391kek   A140149MLASSSVQEAEEE--SHHHHbbxbabaaaa
1kfw_A_2371kfw   A240249AFLPANPADIEEE-SSHHHHbxxxaxaaaa
1khb_A_4441khb   A444453VYEALSWQHGEEE-SSHHHHbbbxabaaaa
1knv_A_2731knv   A274283IFSLTSFEDIEEE--BHHHHbbbxabaaaa
1l2l_A_901l2l   A91100ELLVVSREVREEEB--HHHHbbxxabaaaa
1lc5_A_2261lc5   A227236YLVNSDDAAMEEE---HHHHbbbbaxaaaa
1lcy_A_2861lcy   A286294.QMVQNAEDV.EE--SHHHH.bxbabaaaa
1lfp_A_2071lfp   A207215.VQINDEETA.EE---HHHH.bxbaxaaaa
1lj8_A_591lj8   A6170CGVGLRSEDREEEB-STTHHbxbbabaaaa
1m3u_A_191m3u   A2130TITAYDYSFAEEE--SHHHHbbxbabaaaa
1mai_*_1081mai   -109118DLIAPSPADAEEE-SSHHHHbbbxabaaaa
1mve_A_1351mve   A140149LWSSESAAWVEEEBS-HHHHbbbxaxaaaa
1n0w_A_1921n0w   A192200.ARAFNTDHQ.EE--SHHHH.bbxabaaaa
1nfp_*_711nfp   -7382HVLATSPETVEEE--SHHHHbbxxabaaaa
1noy_A_581noy   A5866.QKFPSMKDA.EE-SSHHHH.bxxabaaaa
1nrw_A_1691nrw   A173182LGFSFFKEKLEEE-S-HHHHbbbbaxaaaa
1oey_J_2941oey   J294303LVRLLSDEDVEEE--SHHHHxbxxabaaaa
1ohe_A_1171ohe   A120129HFTGSDQRKQEEE-S-HHHHxbbxaxaaaa
1omw_A_6291omw   A631640VLQCDSDPELEEE-SSHHHHbbbbabaaaa
1osp_O_2601osp   O260268.VEITKLDEI.EE--SHHHH.bxxabaaaa
1p4p_A_2831p4p   A283291.SEIKNLSEL.EE--SHHHH.bxxabaaaa
1pot_*_1631pot   -163172LLLTDDAREVEEE-S-HHHHbbbxabaaaa
1pyt_A_111pyt   A1423RITAADEAEVEEE-SSHHHHbxbxabaaaa
1q0s_A_461q0s   A4756LANDIQEPIIEEE-S-HHHHbxbbaxaaaa
1qb0_A_4411qb0   A441449.VNLPLERDA.EE--SHHHH.bxbaxaaaa
1qcs_A_81qcs   A817AARCPTDELSEEE-S-HHHHxbxpabaaaa
1qhl_A_1641qhl   A165174FKQFNSITDYEEE-S-HHHHbbbbabaaaa
1rhc_A_1701rhc   A171180YFSGMGPKGAEEE--SHHHHxbxbaxaaaa
1roc_A_1041roc   A114123NNEYDEEELREEEESSHHHHbxbxabaaaa
1rvx_A_1751rvx   A182191IHHPPNSKEQEEE-SSHHHHbxbpabaaaa
1s96_A_1651s96   A166175LIVNDDFDTAEEE-SSHHHHbbbxaxaaaa
1ua4_A_871ua4   A8897ELFVESCPVREEEB--HHHHbbxxaxaaaa
1uae_*_3641uae   -364373QVMATDLRASEEE--SHHHHxbbxabaaaa
1uc7_A_111uc7   A1119.TQIKTVDEL.EE--SHHHH.xxbabaaaa
1uqr_A_451uqr   A4857YFQANGEESLEEE-SSHHHHbbbbabaaaa
2trc_P_1142trc   P114123VYELETGEQFEEE--SHHHHxbxxabaaaa
2viu_A_1762viu   A182191IHHPSTNQEQEEE-SSHHHHbxbxabaaaa
8abp_*_338abp   -3746KIAVPDGEKTEEE--SHHHHxbxbabaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a26_*_8951a26   *     CNACARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 896
1a26_*_8951a26   *     CNACARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 903
1amf_*_541amf   *     MOOMOLYBDATE ION S - 57
1amf_*_541amf   *     MOOMOLYBDATE ION A - 58
1amf_*_541amf   *     MOOMOLYBDATE ION D - 59
1bif_*_2971bif   *     GOLGLYCEROL F - 299
1bif_*_2971bif   *     PO4PHOSPHATE ION M - 303
1bif_*_2971bif   *     PO4PHOSPHATE ION R - 305
1d2e_A_1211d2e   A     MO4MAGNESIUM ION, 4 WATERS COORDINATED D - 126
1d2e_A_1211d2e   A     GDPGUANOSINE-5'-DIPHOSPHATE D - 126
1d2e_A_1211d2e   A     MO4MAGNESIUM ION, 4 WATERS COORDINATED C - 127
1d2e_A_1211d2e   A     GDPGUANOSINE-5'-DIPHOSPHATE C - 127
1d2e_A_1211d2e   A     MO4MAGNESIUM ION, 4 WATERS COORDINATED P - 128
1d2e_A_1211d2e   A     GDPGUANOSINE-5'-DIPHOSPHATE P - 128
1d2e_A_1211d2e   A     MO4MAGNESIUM ION, 4 WATERS COORDINATED G - 129
1d2e_A_1211d2e   A     MO4MAGNESIUM ION, 4 WATERS COORDINATED Y - 133
1e9l_A_1791e9l   A     GCSD-GLUCOSAMINE T - 183
1eix_A_171eix   A     BMQ1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL)BARBITURIC ACID A - 20
1eix_A_171eix   A     BMQ1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL)BARBITURIC ACID D - 22
1gnt_A_4861gnt   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER W - 492
1gnt_A_4861gnt   A     FS4IRON/SULFUR CLUSTER Y - 493
1gnt_A_4861gnt   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER Y - 493
1gnt_A_4861gnt   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER E - 494
1gnt_A_4861gnt   A     FS4IRON/SULFUR CLUSTER Q - 495
1gnt_A_4861gnt   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER Q - 495
1gnt_A_4861gnt   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER K - 496
1gnt_A_4861gnt   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER A - 497
1gnt_A_4861gnt   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER V - 498
1goj_A_1751goj   A     MGMAGNESIUM ION R - 194
1gtz_A_511gtz   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 59
1ihu_A_4911ihu   A     ADPADENOSINE-5'-DIPHOSPHATE V - 496
1ihu_A_4911ihu   A     TASTRIHYDROXYARSENITE(III) P - 499
1ihu_A_4911ihu   A     ADPADENOSINE-5'-DIPHOSPHATE E - 500
1ihu_A_4911ihu   A     TASTRIHYDROXYARSENITE(III) E - 500
1ihu_A_4911ihu   A     ADPADENOSINE-5'-DIPHOSPHATE T - 501
1ihu_A_4911ihu   A     MGMAGNESIUM ION T - 502
1ihu_A_4911ihu   A     ADPADENOSINE-5'-DIPHOSPHATE T - 502
1ihu_A_4911ihu   A     ADPADENOSINE-5'-DIPHOSPHATE P - 503
1itx_A_2471itx   A     GOLGLYCEROL A - 251
1itx_A_2471itx   A     GOLGLYCEROL S - 252
1itx_A_2471itx   A     GOLGLYCEROL G - 253
1itx_A_2471itx   A     GOLGLYCEROL A - 254
1itx_A_2471itx   A     GOLGLYCEROL S - 255
1jyk_A_2141jyk   A     MSESELENOMETHIONINE I - 214
1k87_A_4801k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 485
1k87_A_4801k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 486
1k87_A_4801k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 487
1k87_A_4801k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 488
1k87_A_4801k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 491
1k87_A_4801k87   A     1PEPENTAETHYLENE GLYCOL Q - 497
1k87_A_4801k87   A     1PEPENTAETHYLENE GLYCOL L - 498
1kfw_A_2371kfw   A     GOLGLYCEROL F - 241
1kfw_A_2371kfw   A     GOLGLYCEROL D - 248
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL E - 446
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL A - 447
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL L - 448
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL S - 449
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL W - 450
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL Q - 451
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL G - 453
1lc5_A_2261lc5   A     PIHYDROGENPHOSPHATE ION G - 226
1lj8_A_591lj8   A     MSESELENOMETHIONINE S - 59
1lj8_A_591lj8   A     MSESELENOMETHIONINE I - 60
1lj8_A_591lj8   A     MSESELENOMETHIONINE C - 61
1lj8_A_591lj8   A     MSESELENOMETHIONINE G - 62
1lj8_A_591lj8   A     MSESELENOMETHIONINE V - 63
1lj8_A_591lj8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 63
1lj8_A_591lj8   A     MSESELENOMETHIONINE G - 64
1lj8_A_591lj8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 65
1lj8_A_591lj8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 66
1lj8_A_591lj8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 68
1lj8_A_591lj8   A     MSESELENOMETHIONINE D - 69
1lj8_A_591lj8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 69
1lj8_A_591lj8   A     MSESELENOMETHIONINE R - 70
1lj8_A_591lj8   A     MSESELENOMETHIONINE A - 72
1lj8_A_591lj8   A     MSESELENOMETHIONINE R - 73
1lj8_A_591lj8   A     MSESELENOMETHIONINE L - 76
1m3u_A_191m3u   A     KPLKETOPANTOATE T - 23
1m3u_A_191m3u   A     KPLKETOPANTOATE Y - 25
1mai_*_1081mai   *     I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE L - 108
1mve_A_1351mve   A     MSESELENOMETHIONINE L - 136
1mve_A_1351mve   A     CACALCIUM ION L - 136
1mve_A_1351mve   A     MSESELENOMETHIONINE R - 137
1mve_A_1351mve   A     CACALCIUM ION R - 137
1mve_A_1351mve   A     MSESELENOMETHIONINE F - 138
1mve_A_1351mve   A     CACALCIUM ION F - 138
1mve_A_1351mve   A     MSESELENOMETHIONINE N - 139
1mve_A_1351mve   A     CACALCIUM ION N - 139
1n0w_A_1921n0w   A     EDO1,2-ETHANEDIOL R - 193
1n0w_A_1921n0w   A     MSESELENOMETHIONINE T - 201
1n0w_A_1921n0w   A     MSESELENOMETHIONINE L - 203
1n0w_A_1921n0w   A     MSESELENOMETHIONINE L - 204
1n0w_A_1921n0w   A     MSESELENOMETHIONINE Y - 205
1n0w_A_1921n0w   A     MSESELENOMETHIONINE Q - 206
1n0w_A_1921n0w   A     MSESELENOMETHIONINE A - 207
1n0w_A_1921n0w   A     MSESELENOMETHIONINE S - 208
1nfp_*_711nfp   *     MYRMYRISTIC ACID I - 72
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE V - 74
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE T - 77
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE S - 78
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE P - 79
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE E - 80
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE T - 81
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE K - 84
1nfp_*_711nfp   *     MYRMYRISTIC ACID K - 84
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE A - 85
1nfp_*_711nfp   *     MYRMYRISTIC ACID K - 87
1oey_J_2941oey   J     MSESELENOMETHIONINE L - 297
1oey_J_2941oey   J     MSESELENOMETHIONINE E - 301
1oey_J_2941oey   J     MSESELENOMETHIONINE D - 302
1oey_J_2941oey   J     MSESELENOMETHIONINE V - 303
1oey_J_2941oey   J     MSESELENOMETHIONINE A - 304
1pot_*_1631pot   *     SPDSPERMIDINE D - 168
1pot_*_1631pot   *     SPDSPERMIDINE R - 170
1pot_*_1631pot   *     SPDSPERMIDINE E - 171
1q0s_A_461q0s   A     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 49
1q0s_A_461q0s   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 50
1q0s_A_461q0s   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 51
1q0s_A_461q0s   A     SAHS-ADENOSYL-L-HOMOCYSTEINE Q - 52
1q0s_A_461q0s   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 55
1qcs_A_81qcs   A     MSESELENOMETHIONINE A - 8
1rhc_A_1701rhc   A     F42COENZYME F420 S - 173
1rhc_A_1701rhc   A     F42COENZYME F420 G - 174
1rhc_A_1701rhc   A     F42COENZYME F420 M - 175
1rhc_A_1701rhc   A     F42COENZYME F420 G - 176
1rhc_A_1701rhc   A     F42COENZYME F420 P - 177
1rhc_A_1701rhc   A     F42COENZYME F420 K - 178
1rhc_A_1701rhc   A     F42COENZYME F420 G - 179
1rhc_A_1701rhc   A     F42COENZYME F420 A - 180
1rvx_A_1751rvx   A     SIAO-SIALIC ACID H - 183
1rvx_A_1751rvx   A     SIAO-SIALIC ACID H - 184
1rvx_A_1751rvx   A     SIAO-SIALIC ACID P - 185
1rvx_A_1751rvx   A     SIAO-SIALIC ACID P - 186
1rvx_A_1751rvx   A     SIAO-SIALIC ACID E - 190
1rvx_A_1751rvx   A     GALD-GALACTOSE E - 190
1rvx_A_1751rvx   A     SIAO-SIALIC ACID L - 194
1rvx_A_1751rvx   A     SIAO-SIALIC ACID Y - 195
1s96_A_1651s96   A     MSESELENOMETHIONINE Y - 165
1s96_A_1651s96   A     MSESELENOMETHIONINE L - 166
1s96_A_1651s96   A     MSESELENOMETHIONINE E - 186
1ua4_A_871ua4   A     GLCGLUCOSE E - 88
1uae_*_3641uae   *     FCNFOSFOMYCIN D - 369
1uae_*_3641uae   *     FCNFOSFOMYCIN L - 370
1uae_*_3641uae   *     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE R - 371
1uae_*_3641uae   *     FCNFOSFOMYCIN R - 371
1uqr_A_451uqr   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 54
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gnt_A_4861gnt   A FSOFSO BINDING SITE FOR CHAIN AK - 496
1gtz_A_511gtz   A TRATRS BINDING SITE FOR CHAIN AE - 59
1h05_A_461h05   A SO3SO4 BINDING SITE FOR CHAIN AR - 50
1h05_A_461h05   A SO2SO4 BINDING SITE FOR CHAIN AS - 54
1h05_A_461h05   A SO3SO4 BINDING SITE FOR CHAIN AW - 61
1h05_A_461h05   A SO3SO4 BINDING SITE FOR CHAIN AQ - 64
1uqr_A_451uqr   A AC1SO4 BINDING SITE FOR CHAIN AG - 53
1uqr_A_451uqr   A AC1SO4 BINDING SITE FOR CHAIN AE - 54
1uqr_A_451uqr   A AC1SO4 BINDING SITE FOR CHAIN AE - 55

Clusters included in this Subclass
CLUSTER: EH.2.20
CLUSTER: EH.2.43
CLUSTER: EH.3.13
CLUSTER: EH.4.5