ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.9.1

Subclass Accession number: 2959
Subclass: 3.9.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 14.0 +/- 16.6
Average RMSD (Å) : 0.864 +/- 0.320

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	hphppXX
(φψ)-conformation:	bbaabaa

Pattern:	[AILMV]	x	[ACFILV]	[drst]	[afgil]	[DNRS]	[ADERS]	x	x	[aegst]	[altv]	x	x	[afilv]
Conservation:	1.429	-0.886	0.773	-0.183	-0.946	2.127	0.947	-0.820	-1.037	-0.024	0.065	-0.771	-0.908	0.234

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f2v_A_132	1f2v	A	132	145	VVAIGNAPTALFFL	EEEE-S-HHHHHHH	bxbbaaxaaaaaaa
1gtk_A_201	1gtk	A	203	216	IECRLDDSRTRELL	EEEETT-HHHHHHH	bbbxaaxaaaaaaa
1jdw_*_369	1jdw	-	370	383	VMVDANEVPIQKMF	EEEETT-HHHHHHH	bxbxaaxaaaaaaa
1kgd_A_887	1kgd	A	887	900	LTIINNEIDETIRH	EEEE-SSHHHHHHH	bbbxaabaaaaaaa
1kmq_A_79	1kmq	A	82	95	MCFSIDSPDSLENI	EEEETT-HHHHHHH	bbbbaabaaaaaaa
1m7b_A_97	1m7b	A	100	113	ICFDISRPETLDSV	EEEETT-HHHHHHH	xbbbaabaaaaaaa
1mxs_A_55	1mxs	A	56	69	LEVTLRSQHGLKAI	EEEESSSTHHHHHH	bbxxaabaaaaaaa
1np6_A_152	1np6	A	152	165	ALLDINDVEGLADF	EEEETT-HHHHHHH	pbbxaabaaaaaaa
1ols_A_249	1ols	A	251	264	IRVDGNDVFAVYNA	EEEETT-HHHHHHH	bbbxaabaaaaaaa
1qs0_A_270	1qs0	A	272	285	LRVDGNDFVAVYAA	EEEETT-HHHHHHH	bbbxaabaaaaaaa
1vhc_A_43	1vhc	A	44	57	AEITFRSEAAADAI	EEEETTSTTHHHHH	bbxxaabaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kmq_A_79	1kmq	A	MGMAGNESIUM ION	D - 90
1kmq_A_79	1kmq	A	MGMAGNESIUM ION	E - 93
1kmq_A_79	1kmq	A	MGMAGNESIUM ION	N - 94
1kmq_A_79	1kmq	A	MGMAGNESIUM ION	E - 97
1qs0_A_270	1qs0	A	MSESELENOMETHIONINE	F - 279

Clusters included in this Subclass

CLUSTER: EH.2.129

CLUSTER: EH.4.52