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Information on SUBCLASS 3.9.2
Subclass Accession number: 2960
Subclass: 3.9.2 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 26.5 +/- 27.0
Average RMSD (Å) : 0.560 +/- 0.389

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: hXXXpXp
(φψ)-conformation: bbaabaa
Pattern: [HIV]x[cilv][ACFIV][dsv][cersw][acgn][DHQ][hpr][DEKQS][HQRW][filmvy][degnpq][adek][acltv]x
Conservation:1.335-0.400-0.0470.224-0.044-0.975-0.8342.2800.0071.2280.639-0.089-1.515-0.009-0.499-1.301
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a4m_A_1471a4m   A151166ILCCMRHQPSWSLEVLEEEEETT-GGGHHHHHbxxxbaabaaaaaaaa
1dp4_A_1821dp4   A185200HQEFVEGDPDHYPKLLEEEE-TT-GGGHHHHHbbxbbaabaaaaaaaa
1e0s_A_831e0s   A85100IFVVDCADRDRIDEAREEEEETT-GGGHHHHHbbbbxaabaaaaaaaa
1f6b_A_951f6b   A97112VFLVDCADHERLLESKEEEEETT-GGGHHHHHbbxbxaabaaaaaaaa
1fzq_A_871fzq   A89104IYVIDSADRKRFEETGEEEEETT-GGGHHHHHbbbbxaaxaaaaaaaa
1gs5_A_2321gs5   A232247VDIASWRHAEQLPALFEEEEESS-GGGHHHHHbbbbxaabaaaaaaaa
1ksh_A_861ksh   A88103IWVVDSADRQRMQDCQEEEEETT-GGGHHHHHbbxbxaabaaaaaaaa
1m2o_B_931m2o   B95110VFLVDAADPERFDEAREEEEETT-GGGHHHHHbbxbxaabaaaaaaaa
1r8s_A_871r8s   A89104IFVVDSNDRERVNEAREEEEETT-GGGHHHHHbbbbxaaxaaaaaaaa
1upt_A_871upt   A89104IYVVDSCDRDRIGISKEEEEETT--TTHHHHHxbxbxaaxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a4m_A_1471a4m   A     PRH6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE C - 153
1a4m_A_1471a4m   A     PRH6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE M - 155
1e0s_A_831e0s   A     GDPGUANOSINE-5'-DIPHOSPHATE D - 89
1f6b_A_951f6b   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 99
1f6b_A_951f6b   A     GDPGUANOSINE-5'-DIPHOSPHATE D - 101
1fzq_A_871fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE D - 93
1ksh_A_861ksh   A     GDPGUANOSINE-5'-DIPHOSPHATE V - 90
1ksh_A_861ksh   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE S - 93
1m2o_B_931m2o   B     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER L - 97
1r8s_A_871r8s   A     GDPGUANOSINE-5'-DIPHOSPHATE V - 91
1r8s_A_871r8s   A     FMTFORMIC ACID L - 111
1upt_A_871upt   A     MSESELENOMETHIONINE V - 88
1upt_A_871upt   A     MSESELENOMETHIONINE I - 89
1upt_A_871upt   A     MSESELENOMETHIONINE Y - 90
1upt_A_871upt   A     GTPGUANOSINE-5'-TRIPHOSPHATE V - 91
1upt_A_871upt   A     MSESELENOMETHIONINE V - 92
1upt_A_871upt   A     MSESELENOMETHIONINE D - 93
1upt_A_871upt   A     MSESELENOMETHIONINE S - 94
1upt_A_871upt   A     MSESELENOMETHIONINE C - 95
1upt_A_871upt   A     MSESELENOMETHIONINE D - 96
1upt_A_871upt   A     MSESELENOMETHIONINE R - 97
1upt_A_871upt   A     MSESELENOMETHIONINE I - 100
1upt_A_871upt   A     MSESELENOMETHIONINE S - 105
1upt_A_871upt   A     MSESELENOMETHIONINE E - 106
1upt_A_871upt   A     MSESELENOMETHIONINE L - 107
1upt_A_871upt   A     MSESELENOMETHIONINE V - 108

Clusters included in this Subclass
CLUSTER: EH.6.24