ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.9.6

Subclass Accession number: 2964
Subclass: 3.9.6

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 52.8 +/- 2.3
Average RMSD (Å) : 0.267 +/- 0.058

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hhhcXhX
(φψ)-conformation:	bbaabaa

Pattern:	[V]	[C]	[AG]	x	[I]	[FIL]	[AP]	[W]	[N]	[AFY]	[P]	[FLM]	[ILM]	[ILM]	x	[A]	[CW]	[K]	[CIL]	[AG]	[P]	[A]	[L]	[AC]
Conservation:	0.038	1.973	-0.443	-1.553	0.038	-0.736	-0.497	2.747	0.812	-0.865	1.199	-0.693	-0.521	-0.521	-1.295	0.038	0.198	0.425	-0.779	-0.443	1.199	0.038	0.038	-0.392

Loops included in this Subclass

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1o04_A_161	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 165
1o04_A_161	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 166
1o04_A_161	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	P - 167
1o04_A_161	1o04	A	MGMAGNESIUM ION	W - 168
1o04_A_161	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	W - 168
1o04_A_161	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	N - 169
1o04_A_161	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	F - 170
1o04_A_161	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	M - 174
1o04_A_161	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	W - 177
1o9j_A_161	1o9j	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	F - 166
1o9j_A_161	1o9j	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 174

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o9j_A_161	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	I - 165
1o9j_A_161	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	F - 166
1o9j_A_161	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	P - 167
1o9j_A_161	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	W - 168
1o9j_A_161	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	N - 169

Clusters included in this Subclass