ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.28.1

Subclass Accession number: 3003
Subclass: 3.28.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 52.2 +/- 32.2
Average RMSD (Å) : 0.625 +/- 0.386

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 45-90

Consensus Sequence:	hhhGphX
(φψ)-conformation:	bbpepaa

Pattern:	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x
Conservation:	-1.007	0.844	0.083	-0.837	2.754	-0.559	0.135	0.138	-0.128	-0.390	-0.459	1.225	0.037	-1.105	-0.729

Loops included in this Subclass

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bxs_A_218	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 223
1bxs_A_218	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Y - 224
1bxs_A_218	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 225
1bxs_A_218	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	P - 226
1bxs_A_218	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	T - 227
1bxs_A_218	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 229
1bxs_A_218	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 230
1bxs_A_218	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	S - 233
1o04_A_218	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	F - 224
1o04_A_218	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 228
1o04_A_218	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 231
1o04_A_218	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 233
1psw_A_216	1psw	A	MSESELENOMETHIONINE	V - 216
1psw_A_216	1psw	A	MSESELENOMETHIONINE	V - 217

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o9j_A_218	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	G - 225
1o9j_A_218	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	G - 229
1o9j_A_218	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	A - 230

Clusters included in this Subclass