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Information on SUBCLASS 3.28.1
Subclass Accession number: 3003
Subclass: 3.28.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 52.2 +/- 32.2
Average RMSD (Å) : 0.625 +/- 0.386

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: hhhGphX
(φψ)-conformation: bbpepaa
Pattern: xxxxxxxxxxxxxxx
Conservation:-1.0070.8440.083-0.8372.754-0.5590.1350.138-0.128-0.390-0.4591.2250.037-1.105-0.729
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bxs_A_2181bxs   A219233NIVPGYGPTAGAAISEE--S-TTTHHHHHHbbbxexaaaaaaaaa
1o04_A_2181o04   A219233NIVPGFGPTAGAAIAEE--B-TTTHHHHHHbbbxexaaaaaaaaa
1o9j_A_2181o9j   A219233NIVPGYGPTAGAAISEE----TTTHHHHHHbbbxexaaaaaaaaa
1psw_A_2161psw   A216230VVLFGSAKDHEAGNEEEE---GGGHHHHHHbbbbexaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bxs_A_2181bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 223
1bxs_A_2181bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 224
1bxs_A_2181bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 225
1bxs_A_2181bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE P - 226
1bxs_A_2181bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 227
1bxs_A_2181bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 229
1bxs_A_2181bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 230
1bxs_A_2181bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 233
1o04_A_2181o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 224
1o04_A_2181o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 228
1o04_A_2181o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 231
1o04_A_2181o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 233
1psw_A_2161psw   A     MSESELENOMETHIONINE V - 216
1psw_A_2161psw   A     MSESELENOMETHIONINE V - 217
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o9j_A_2181o9j   A NDANAD BINDING SITE FOR CHAIN AG - 225
1o9j_A_2181o9j   A NDANAD BINDING SITE FOR CHAIN AG - 229
1o9j_A_2181o9j   A NDANAD BINDING SITE FOR CHAIN AA - 230

Clusters included in this Subclass
CLUSTER: EH.6.164