ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.39.1

Subclass Accession number: 3014
Subclass: 3.39.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.1 (>75 %)  1.1.1 (>75 %)
GO : GO:0004457 (>75 %)  GO:0004459 (>75 %)  GO:0016614 (>75 %)  GO:0016616 (>75 %)
SCOP : 51734 (>75 %)  51735 (>75 %)  51848 (>75 %)

Number of loops: 6

Average sequence ID (%) : 32.9 +/- 24.1
Average RMSD (Å) : 0.300 +/- 0.126

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	hhGhGXh
(φψ)-conformation:	bbSapaa

Pattern:	[ILV]	[AGSV]	[IL]	[ivy]	[G]	x	[AG]	x	[IMV]	[G]	[QRS]	[ANST]	[LTVY]	[AFI]	[fhkr]	[anr]	[ALM]
Conservation:	0.522	-0.501	0.593	-0.607	2.135	-0.983	0.894	-1.093	0.423	2.135	-0.146	-0.210	-0.576	-0.459	-0.942	-0.982	-0.202

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a5z_*_23	1a5z	-	24	40	IGIVGLGRVGSSTAFAL	EEEE--SHHHHHHHHHH	bbbbSaxaaaaaaaaaa
1ez4_A_22	1ez4	A	23	39	VVLVGDGAVGSSYAFAM	EEEE--SHHHHHHHHHH	bbxbSaxaaaaaaaaaa
1gd1_O_1	1gd1	O	3	19	VGINGFGRIGRNVFRAA	EEEE--SHHHHHHHHHH	bbbbvaxaaaaaaaaaa
1gdh_A_149	1gdh	A	150	166	LGIYGFGSIGQALAKRA	EEEE--SHHHHHHHHHH	bxbxSaxaaaaaaaaaa
1ur5_A_4	1ur5	A	5	21	ISIIGAGFVGSTTAHWL	EEEE--SHHHHHHHHHH	bbbxSaxaaaaaaaaaa
2pgd_*_5	2pgd	-	5	21	IALIGLAVMGQNLILNM	EEEE--SHHHHHHHHHH	bbbbSaxaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a5z_*_23	1a5z	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 27
1a5z_*_23	1a5z	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 28
1a5z_*_23	1a5z	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 29
1a5z_*_23	1a5z	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 30
1a5z_*_23	1a5z	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	R - 31
1a5z_*_23	1a5z	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 32
1a5z_*_23	1a5z	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 33
1ez4_A_22	1ez4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 26
1ez4_A_22	1ez4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 27
1ez4_A_22	1ez4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	D - 28
1ez4_A_22	1ez4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 29
1ez4_A_22	1ez4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 30
1ez4_A_22	1ez4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 31
1ez4_A_22	1ez4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 32
1gd1_O_1	1gd1	O	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	N - 6
1gd1_O_1	1gd1	O	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 7
1gd1_O_1	1gd1	O	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	F - 8
1gd1_O_1	1gd1	O	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 9
1gd1_O_1	1gd1	O	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	R - 10
1gd1_O_1	1gd1	O	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 11
1gd1_O_1	1gd1	O	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 12
1gd1_O_1	1gd1	O	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	R - 13
1ur5_A_4	1ur5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 8
1ur5_A_4	1ur5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 10
1ur5_A_4	1ur5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 11
1ur5_A_4	1ur5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	F - 12
1ur5_A_4	1ur5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 13
1ur5_A_4	1ur5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 14

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1ur5_A_4	1ur5	A	AC1NAD BINDING SITE FOR CHAIN A	G - 9
1ur5_A_4	1ur5	A	BC2NA BINDING SITE FOR CHAIN A	H - 19

Clusters included in this Subclass

CLUSTER: EH.2.115