ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.5.3

Subclass Accession number: 3067
Subclass: 4.5.3

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 6

Average sequence ID (%) : 13.3 +/- 17.1
Average RMSD (Å) : 0.900 +/- 0.110

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	phhhppXX
(φψ)-conformation:	bbppapaa

Pattern:	[ery]	[ILPT]	[ilmv]	[GPVY]	[DKNST]	[dns]	[EPT]	[AEKQ]	[kmq]	x	[akqs]	x
Conservation:	-0.816	-0.172	0.766	-1.011	0.682	0.753	1.309	0.837	0.422	0.168	-0.868	-2.071

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aye_*_11	1aye	-	14	25	EIVPSNEEQIKN	EE---SHHHHHH	bbbxabaaaaaa
1elj_A_333	1elj	A	333	344	YLMPKSPKMSAV	EE----TTHHHH	xxpxapwaaaaa
1pca_*_11	1pca	-	14	25	RISVDDEAQVQK	EE---SHHHHHH	bxxbabaaaaaa
1ru3_A_465	1ru3	A	468	479	VTIYTDEQKVLE	EE----HHHHHH	bbxbaxaaaaaa
1sx5_A_30	1sx5	A	31	42	YPLGSDTAVLST	EE--SSHHHHHH	bxxxaxaaaaaa
3mbp_*_328	3mbp	-	328	339	EIMPNIPQMSAF	EE---STTHHHH	bxxxaxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1elj_A_333	1elj	A	GLCGLUCOSE	M - 335
1elj_A_333	1elj	A	GLCGLUCOSE	W - 345
1elj_A_333	1elj	A	GLCGLUCOSE	D - 349
1pca_*_11	1pca	*	CITCITRIC ACID	D - 19
1pca_*_11	1pca	*	CITCITRIC ACID	E - 20
1pca_*_11	1pca	*	CITCITRIC ACID	A - 21
1pca_*_11	1pca	*	CITCITRIC ACID	Q - 22
1pca_*_11	1pca	*	CITCITRIC ACID	V - 23
1pca_*_11	1pca	*	CITCITRIC ACID	K - 25
1sx5_A_30	1sx5	A	MNMANGANESE (II) ION	D - 36
1sx5_A_30	1sx5	A	MNMANGANESE (II) ION	E - 45
3mbp_*_328	3mbp	*	GLCGLUCOSE	M - 330
3mbp_*_328	3mbp	*	GLCGLUCOSE	M - 336
3mbp_*_328	3mbp	*	GLCGLUCOSE	S - 337
3mbp_*_328	3mbp	*	GLCGLUCOSE	W - 340
3mbp_*_328	3mbp	*	GLCGLUCOSE	Y - 341
3mbp_*_328	3mbp	*	GLCGLUCOSE	R - 344

Clusters included in this Subclass

CLUSTER: EH.5.118