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Information on SUBCLASS 4.8.1
Subclass Accession number: 3078
Subclass: 4.8.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 13.1 +/- 14.7
Average RMSD (Å) : 0.771 +/- 0.335

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: hXXXXXpX
(φψ)-conformation: bbabppaa
Pattern: [ailv][FGIL][ITV][AGPST][adgkn]x[FHIV]x[DEHNQR][aeqst][dhrt][aikl]
Conservation:0.3140.7672.3560.196-1.010-0.9120.300-1.2730.659-0.348-0.353-0.696
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aco_*_6561aco   -658669AIITKSFARIHEEEEES-B-HHHHbbbbabbxaaaa
1ax4_A_1251ax4   A125136VFISNFHFDTTAEEEESS--HHHHbbbbabxxaaaa
1dc1_A_2761dc1   A278289IFIGAAIEHSMAEEEESS--HHHHbbbbabbbaaaa
1i5p_A_4221i5p   A427438SGVPLVIRNEDLEEEESS--HHHHbebxabxxaaaa
1knw_A_971knw   A98109VFTADVIDQATLEEEES---HHHHbxbbabbxaaaa
1kzy_C_18011kzy   C18031814LLIADQHCRTRKEEEESS---SHHbxbbabxbaxaa
1nmo_A_1891nmo   A189200AFITGEVSEQTIEEEES---HHHHbbbbabbbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ax4_A_1251ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) F - 132
1ax4_A_1251ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 134
1ax4_A_1251ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 135
1knw_A_971knw   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 100
1nmo_A_1891nmo   A     FEFE (III) ION E - 197
1nmo_A_1891nmo   A     MSESELENOMETHIONINE Q - 198
1nmo_A_1891nmo   A     MSESELENOMETHIONINE H - 201
1nmo_A_1891nmo   A     MSESELENOMETHIONINE S - 202
1nmo_A_1891nmo   A     MSESELENOMETHIONINE E - 205
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ax4_A_1251ax4   A LPAPYRIDOXAL 5-PHOSPHATE BINDING SITE.F - 132

Clusters included in this Subclass
CLUSTER: EH.3.149
CLUSTER: EH.5.125