Logo
Information on SUBCLASS 4.8.4
Subclass Accession number: 3081
Subclass: 4.8.4 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0016661 (>50 %)  GO:0030151 (>50 %)  GO:0046914 (>50 %)  
SCOP : 53705 (>50 %)  53706 (>50 %)  53707 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 7.7 +/- 10.8
Average RMSD (Å) : 0.700 +/- 0.173

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXXXXX
(φψ)-conformation: bbabppaa
Pattern: [IV][AV]x[ADT][DP][DSV]x[ADT][EGK]x[AFV][EKM]x
Conservation:2.1300.811-0.344-0.3441.903-0.884-0.668-0.344-0.236-0.344-0.452-0.128-1.099
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dms_*_2161dms   -218230IVIDPVRTKTVEFEEE-SB--HHHHHbbbbabxxaaaaa
1p80_A_7181p80   A718730IVEADSADGSFMDEEEESS--HHHHHbxbbabxbaaaaa
1q16_A_2761q16   A278290VAVTPDYAEIAKLEEE-SS--HHHHHbbbbabxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dms_*_2161dms   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE I - 220
1dms_*_2161dms   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 221
1dms_*_2161dms   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE P - 222
1dms_*_2161dms   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE V - 223
1dms_*_2161dms   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE T - 225

Clusters included in this Subclass
CLUSTER: EH.5.323