ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.47.1

Subclass Accession number: 3156
Subclass: 4.47.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 31.1 +/- 27.0
Average RMSD (Å) : 0.640 +/- 0.378

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hXcXXcXX
(φψ)-conformation:	bpabaeaa

Pattern:	[IL]	[FGIV]	[VY]	x	[KNP]	x	[KPR]	[ADG]	[el]	[aqt]	[EHQ]	[APQ]	x	[CR]	[ILMY]	[EL]	[FL]	[AEG]	[DKY]
Conservation:	1.806	-1.667	2.002	0.273	0.200	-0.161	0.288	-0.012	-1.416	-0.915	1.204	-0.031	-1.040	0.453	-0.070	-0.506	0.968	-0.654	-0.721

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b4p_A_2	1b4p	A	4	22	LGYWNVRGLTHPIRLLLEY	EEEESS-TTTHHHHHHHHH	bbbxabaeaaaaaaaaaaa
1glq_A_3	1glq	A	5	23	IVYFPVRGRCEAMRMLLAD	EEE-SSSGGGHHHHHHHHH	bbbxabaeaaaaaaaaaaa
1m0u_A_50	1m0u	A	52	70	LFYFNVKALAEPLRYLFAY	EEEESSSGGGHHHHHHHHH	bbbxabaeaaaaaaaaaaa
2fhe_A_2	2fhe	A	4	22	LGYWKIRGLQQPVRLLLEY	EEEESSSTTTHHHHHHHHH	bbbxabaeaaaaaaaaaaa
5nul_*_115	5nul	-	115	133	LIVQNEPDEAEQDCIEFGK	EEEESS-GGGHHHHHHHHH	xbbxexaeaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1b4p_A_2	1b4p	A	GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE	Y - 6
1b4p_A_2	1b4p	A	GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE	W - 7
1b4p_A_2	1b4p	A	GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE	V - 9
1b4p_A_2	1b4p	A	GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE	R - 10
1b4p_A_2	1b4p	A	GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE	G - 11
1b4p_A_2	1b4p	A	GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE	L - 12
1b4p_A_2	1b4p	A	GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE	R - 17
1b4p_A_2	1b4p	A	GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE	L - 20
1b4p_A_2	1b4p	A	GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE	E - 21
1b4p_A_2	1b4p	A	GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE	Y - 22
1glq_A_3	1glq	A	GTBS-(P-NITROBENZYL)GLUTATHIONE	Y - 7
1glq_A_3	1glq	A	GTBS-(P-NITROBENZYL)GLUTATHIONE	F - 8
1glq_A_3	1glq	A	GTBS-(P-NITROBENZYL)GLUTATHIONE	P - 9
1glq_A_3	1glq	A	GTBS-(P-NITROBENZYL)GLUTATHIONE	V - 10
1glq_A_3	1glq	A	GTBS-(P-NITROBENZYL)GLUTATHIONE	G - 12
1glq_A_3	1glq	A	GTBS-(P-NITROBENZYL)GLUTATHIONE	R - 13
1m0u_A_50	1m0u	A	GTTGLUTATHIONE	Y - 54
1m0u_A_50	1m0u	A	GTTGLUTATHIONE	F - 55
1m0u_A_50	1m0u	A	GTTGLUTATHIONE	A - 59
1m0u_A_50	1m0u	A	GTTGLUTATHIONE	L - 60
2fhe_A_2	2fhe	A	GGLGAMMA-GLUTAMIC ACID	L - 12
5nul_*_115	5nul	*	FMNFLAVIN MONONUCLEOTIDE	V - 117
5nul_*_115	5nul	*	FMNFLAVIN MONONUCLEOTIDE	Q - 118
5nul_*_115	5nul	*	FMNFLAVIN MONONUCLEOTIDE	N - 119
5nul_*_115	5nul	*	FMNFLAVIN MONONUCLEOTIDE	E - 120

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1b4p_A_2	1b4p	A	GPSNON3	Y - 6

Clusters included in this Subclass

CLUSTER: EH.5.297

CLUSTER: EH.6.153