ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.48.1

Subclass Accession number: 3157
Subclass: 4.48.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 15.7 +/- 14.1
Average RMSD (Å) : 0.660 +/- 0.195

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hXXGpphE
(φψ)-conformation:	bbpgpbaa

Pattern:	x	x	[dgpv]	[FVY]	[aekm]	[DKPR]	[EG]	[DET]	[NPST]	x	[AE]	[ktv]	[AGIL]	x	[AEKR]	x	[ALVY]	[EKN]	[AEKL]	x	[AEL]
Conservation:	-1.000	-0.008	-1.188	0.682	-0.808	-0.087	2.183	1.277	0.299	-0.612	1.898	-0.111	-0.808	-1.418	0.294	-0.623	-0.174	1.159	-0.515	-1.019	-0.421

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ccw_A_115	1ccw	A	115	134	.RVYAPGTPPEVGIADLKKDL	.EE--TT--HHHHHHHHHHHH	.bbbxpvxxaaaaaaaaaaaa
1j7g_A_26	1j7g	A	30	50	LLGVEKEDNREKADKLAEKVL	EEE-BTT--HHHHHHHHHHHH	xbbbbxvxbaaaaaaaaaaaa
1meo_A_148	1meo	A	153	173	AVPVKRGDTVATLSERVKLAE	EEE--TT--HHHHHHHHHHHH	xbxxbpvpbaaaaaaaaaaaa
1pdo_*_31	1pdo	-	33	53	WIDFVPGENAETLIEKYNAQL	EE-B-TT--HHHHHHHHHHHH	bbbbbpgxbaaaaaaaaaaaa
1rj9_B_156	1rj9	B	156	176	VLEVMDGESPESIRRRVEEKA	EEE--TT--HHHHHHHHHHHH	bbbxxpvxxaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ccw_A_115	1ccw	A	CNCCO-CYANOCOBALAMIN	Y - 117
1ccw_A_115	1ccw	A	CNCCO-CYANOCOBALAMIN	A - 118
1ccw_A_115	1ccw	A	CNCCO-CYANOCOBALAMIN	P - 119
1ccw_A_115	1ccw	A	CNCCO-CYANOCOBALAMIN	G - 120
1ccw_A_115	1ccw	A	CNCCO-CYANOCOBALAMIN	T - 121
1ccw_A_115	1ccw	A	CNCCO-CYANOCOBALAMIN	P - 122
1ccw_A_115	1ccw	A	CNCCO-CYANOCOBALAMIN	P - 123
1ccw_A_115	1ccw	A	CNCCO-CYANOCOBALAMIN	V - 125
1ccw_A_115	1ccw	A	CNCCO-CYANOCOBALAMIN	G - 126
1ccw_A_115	1ccw	A	CNCCO-CYANOCOBALAMIN	I - 127
1meo_A_148	1meo	A	PO4PHOSPHATE ION	K - 170
1meo_A_148	1meo	A	PO4PHOSPHATE ION	H - 174

Clusters included in this Subclass

CLUSTER: EH.5.228

CLUSTER: EH.6.140