Logo
Information on SUBCLASS 2.4.1
Subclass Accession number: 32
Subclass: 2.4.1
Type: EH beta-alpha
DB: ArchDB-KI
Number of loops: 4

Average sequence ID (%) : 50.0 +/- 25.0
Average RMSD (Å) : 0.79 +/- 0.60

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 0-45 rho (°): 135-180
Consensus Sequence: YVPEPM
(φψ)-conformation: bbppaa
Pattern: [AV][VY]x[PY][EQ][LP][AM]x[PY][IW][KR]
Conservation:-0.1810.151-1.177-0.1811.811-1.177-0.513-0.513-0.1810.1511.811
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dek_A_271dek   A2737AVKYQLAGPIKEEE--TTHHHHbbbbxaaaaaa
1kim_A_781kim   A7989VYVPEPMTYWREEE---HHHHHbbxxxaaaaaa
1vtk_*_781vtk   -7989VYVPEPMTYWREEE---HHHHHbbbxxaaaaaa
2ki5_A_782ki5   A7989VYVPEPMTYWREEE---HHHHHbbxxxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dek_A_271dek   A     DGP2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE Q - 31
1dek_A_271dek   A     DGP2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE L - 32
1dek_A_271dek   A     DGP2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE A - 33
1dek_A_271dek   A     DGP2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE I - 36
1dek_A_271dek   A     DGP2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE K - 37
1dek_A_271dek   A     MGMAGNESIUM ION Y - 42
1dek_A_271dek   A     OCSCYSTEINESULFONIC ACID W - 44
1dek_A_271dek   A     OCSCYSTEINESULFONIC ACID G - 45
1dek_A_271dek   A     MGMAGNESIUM ION V - 46
1kim_A_781kim   A     THMTHYMIDINE E - 83
1kim_A_781kim   A     THMTHYMIDINE W - 88
1vtk_*_781vtk   *     ADPADENOSINE-5'-DIPHOSPHATE E - 83
1vtk_*_781vtk   *     TMPTHYMIDINE-5'-PHOSPHATE E - 83
1vtk_*_781vtk   *     TMPTHYMIDINE-5'-PHOSPHATE M - 85
1vtk_*_781vtk   *     TMPTHYMIDINE-5'-PHOSPHATE W - 88
2ki5_A_782ki5   A     AC29-HYROXYETHOXYMETHYLGUANINE E - 83
2ki5_A_782ki5   A     AC29-HYROXYETHOXYMETHYLGUANINE W - 88
Bibliographic annotations
LoopPDBChainAnnotationResidue
1dek_A_271dek   RefA.TEPLYAKOV,P.SEBASTIAO,G.OBMOLOVA,A.PERRAKIS,G.S.BRUSH,M.J.BESSMAN,K.S.WILSON. CRYSTAL STRUCTURE OF BACTERIOPHAGE T4 DEOXYNUCLEOTIDE KINASE WITH ITS SUBSTRATES DGMP AND ATP  EMBO J. v.15;3487,1996ANMP BINDING RESIDUEL - 32
1dek_A_271dek   RefA.TEPLYAKOV,P.SEBASTIAO,G.OBMOLOVA,A.PERRAKIS,G.S.BRUSH,M.J.BESSMAN,K.S.WILSON. CRYSTAL STRUCTURE OF BACTERIOPHAGE T4 DEOXYNUCLEOTIDE KINASE WITH ITS SUBSTRATES DGMP AND ATP  EMBO J. v.15;3487,1996ANMP BINDING RESIDUEA - 33
1dek_A_271dek   RefA.TEPLYAKOV,P.SEBASTIAO,G.OBMOLOVA,A.PERRAKIS,G.S.BRUSH,M.J.BESSMAN,K.S.WILSON. CRYSTAL STRUCTURE OF BACTERIOPHAGE T4 DEOXYNUCLEOTIDE KINASE WITH ITS SUBSTRATES DGMP AND ATP  EMBO J. v.15;3487,1996ANMP BINDING RESIDUEK - 37

Clusters included in this Subclass
CLUSTER: EH.3.10