Information on SUBCLASS 2.4.1 |
Subclass Accession number: 32
Subclass: 2.4.1 Type: EH beta-alpha DB: ArchDB-KI |
Number of loops: 4 Average sequence ID (%) : 50.0 +/- 25.0 Average RMSD (Å) : 0.79 +/- 0.60 Consensus geometry
|
Consensus Sequence: | YVPEPM |
(φψ)-conformation: | bbppaa |
Pattern: | [AV] | [VY] | x | [PY] | [EQ] | [LP] | [AM] | x | [PY] | [IW] | [KR] |
Conservation: | -0.181 | 0.151 | -1.177 | -0.181 | 1.811 | -1.177 | -0.513 | -0.513 | -0.181 | 0.151 | 1.811 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dek_A_27 | 1dek | A | 27 | 37 | AVKYQLAGPIK | EEE--TTHHHH | bbbbxaaaaaa |
1kim_A_78 | 1kim | A | 79 | 89 | VYVPEPMTYWR | EEE---HHHHH | bbxxxaaaaaa |
1vtk_*_78 | 1vtk | - | 79 | 89 | VYVPEPMTYWR | EEE---HHHHH | bbbxxaaaaaa |
2ki5_A_78 | 2ki5 | A | 79 | 89 | VYVPEPMTYWR | EEE---HHHHH | bbxxxaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dek_A_27 | 1dek | A | DGP2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE | Q - 31 |
1dek_A_27 | 1dek | A | DGP2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE | L - 32 |
1dek_A_27 | 1dek | A | DGP2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE | A - 33 |
1dek_A_27 | 1dek | A | DGP2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE | I - 36 |
1dek_A_27 | 1dek | A | DGP2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE | K - 37 |
1dek_A_27 | 1dek | A | MGMAGNESIUM ION | Y - 42 |
1dek_A_27 | 1dek | A | OCSCYSTEINESULFONIC ACID | W - 44 |
1dek_A_27 | 1dek | A | OCSCYSTEINESULFONIC ACID | G - 45 |
1dek_A_27 | 1dek | A | MGMAGNESIUM ION | V - 46 |
1kim_A_78 | 1kim | A | THMTHYMIDINE | E - 83 |
1kim_A_78 | 1kim | A | THMTHYMIDINE | W - 88 |
1vtk_*_78 | 1vtk | * | ADPADENOSINE-5'-DIPHOSPHATE | E - 83 |
1vtk_*_78 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | E - 83 |
1vtk_*_78 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | M - 85 |
1vtk_*_78 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | W - 88 |
2ki5_A_78 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | E - 83 |
2ki5_A_78 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | W - 88 |
Bibliographic annotations |
Clusters included in this Subclass |
CLUSTER: EH.3.10 |