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Information on SUBCLASS 5.2.2
Subclass Accession number: 3204
Subclass: 5.2.2 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 26

Average sequence ID (%) : 12.0 +/- 14.5
Average RMSD (Å) : 0.750 +/- 0.317

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: hXXXXXpXp
(φψ)-conformation: bbaaappaa
Pattern: xx[afiklv][deknprst]x[aegknrs][degknqs]x[adegpst]x[ADEGNQRST][adekqst][afilmvwy]
Conservation:-1.000-1.0000.457-0.562-0.308-0.562-0.617-0.6390.909-1.5801.6681.456-0.222
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1apa_*_91apa   -921ITFDVGNATINKYEEEEGGG--HHHHxbbxaaaxbaaaa
1be9_A_3651be9   A365375..VDLRNASHEQA..EE-TT--HHHH..xxaaaxxaaaa
1cbf_*_701cbf   -7082EVLKTAGMHLEEMEEEE-TT--HHHHxbbxaaabxaaaa
1ckm_A_1541ckm   A154164..VTVSQMDLASR..EE-TTS-HHHH..xxaaaxxaaaa
1dki_A_1581dki   A158170HQINRGDFSKQDWEEEEGGGS-HHHHbxbbaaabxaaaa
1g9o_A_651g9o   A6575..ENVEKETHQQV..EE-TT--HHHH..bxaaaxxaaaa
1gpj_A_41gpj   A719VGITHKEAEVEELEEEETTTS-HHHHbebbaaabxaaaa
1i4n_A_1271i4n   A128140ILIIARILTAEQIEEEEGGGS-HHHHbbbxaaabxaaaa
1ihj_A_771ihj   A7787..KDVRNSTEQAV..EE-TT--HHHH..bxaaaxxaaaa
1k75_A_61k75   A617.IIDWNSCTAEQQ.EEEGGGS-HHHH.xbxaaaxxaaaa
1kwa_A_5421kwa   A542552..ISVANQTVEQL..EEGGGS-HHHH..xxaaabbaaaa
1l2t_A_671l2t   A6777..IKTNDLDDDEL..EE-TT--HHHH..bxaaaxxaaaa
1lln_A_21lln   A214IVFDVENATPETYEE--STT--HHHHbbbxaaaxbaaaa
1n2z_A_811n2z   A8294VIAWRGGNAERQVEEE-TTTS-HHHHbxbbaaabxaaaa
1nf3_C_2211nf3   C221231..IEVSGKSLDQV..EESTT--HHHH..bxaaabxaaaa
1nqk_A_731nqk   A7688VALRPSVTSPTVAEEE-TTTS-HHHHbxbbaaabxaaaa
1nvm_B_1501nvm   B157169ASISSKSAGPGTREEEEGGGS-HHHHbbbxaaaxxaaaa
1ny5_A_1911ny5   A192204VALNVASIPRDIFEEEETTTS-HHHHbbbxaaabpaaaa
1o1z_A_581o1z   A5870LDVKIRDATVSELEEEEGGGS-HHHHbxbxaaabxaaaa
1opj_A_4181opj   A418430AKFPIKWTAPESLEEE-GGG--HHHHbbbxaaaxxaaaa
1p4o_A_11431p4o   A11431154.LLPVRWMSPESL.EE-GGG--HHHH.xbxaaaxxaaaa
1q3o_A_6561q3o   A656666..QNVVKVGHRQV..EE-TT--HHHH..bxaaaxxaaaa
1qau_A_701qau   A7080..RPLVDLSYDSA..EE-TTS-HHHH..bxaaabxaaaa
1qav_A_1351qav   A135145..EDLSSATHDEA..EE-TT--HHHH..xxaaaxxaaaa
1rjb_A_8481rjb   A848860ARLPVKWMAPESLEEE-GGG--HHHHbbxxaaaxxaaaa
2alr_*_182alr   -1828..LGTWKSEPGQV..EE-TT--HHHH..xxaaaxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gpj_A_41gpj   A     GLUGLUTAMIC ACID H - 11
1k75_A_61k75   A     MSESELENOMETHIONINE Q - 17
1k75_A_61k75   A     MSESELENOMETHIONINE R - 18
1k75_A_61k75   A     MSESELENOMETHIONINE Q - 19
1k75_A_61k75   A     MSESELENOMETHIONINE L - 20
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE V - 3
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE F - 4
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE D - 5
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE V - 6
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE E - 7
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE N - 8
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE A - 9
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE T - 10
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE P - 11
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE E - 12
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE Y - 14
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE S - 15
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE T - 19
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE L - 21
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE R - 22
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE E - 23
1lln_A_21lln   A     MLYN-DIMETHYL-LYSINE A - 24
1n2z_A_811n2z   A     CNCCO-CYANOCOBALAMIN W - 85
1n2z_A_811n2z   A     CDCADMIUM ION R - 86
1n2z_A_811n2z   A     CDCADMIUM ION G - 87
1n2z_A_811n2z   A     CNCCO-CYANOCOBALAMIN G - 87
1n2z_A_811n2z   A     CNCCO-CYANOCOBALAMIN G - 88
1n2z_A_811n2z   A     CDCADMIUM ION N - 89
1n2z_A_811n2z   A     CNCCO-CYANOCOBALAMIN N - 89
1n2z_A_811n2z   A     CDCADMIUM ION A - 90
1n2z_A_811n2z   A     CDCADMIUM ION E - 91
1n2z_A_811n2z   A     CDCADMIUM ION R - 92
1nvm_B_1501nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 159
1nvm_B_1501nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 163
1nvm_B_1501nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 164
1nvm_B_1501nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 165
1nvm_B_1501nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE P - 166
1nvm_B_1501nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 167
1nvm_B_1501nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 168
1nvm_B_1501nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 169
1ny5_A_1911ny5   A     MGMAGNESIUM ION N - 195
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1be9_A_3651be9   A PEPRESIDUES INVOLVED IN THE BINDING OF THE FOUR C-TERMINAL RESIDUES OF CRIPT.H - 372
1be9_A_3651be9   A PEPRESIDUES INVOLVED IN THE BINDING OF THE FOUR C-TERMINAL RESIDUES OF CRIPT.L - 379
1cbf_*_701cbf   * P-4PRECORRIN-4 BINDING SITE IN DEEP TROUGH. ALSO, LOCATION OF BOUND PHOSPHATE RESIDUE 401. PHOSPHATE PRESENT FROM CRYSTALLIZATION CONDITIONS.L - 79

Clusters included in this Subclass
CLUSTER: EH.4.79
CLUSTER: EH.5.34
CLUSTER: EH.5.72
CLUSTER: EH.6.21
CLUSTER: EH.6.51
CLUSTER: EH.7.238