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Information on SUBCLASS 5.5.1
Subclass Accession number: 3214
Subclass: 5.5.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 28.6 +/- 23.1
Average RMSD (Å) : 0.481 +/- 0.191

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: hhXXcXGKp
(φψ)-conformation: bbpplagaa
Pattern: [AILMPV][AFGILV][AFILV][afilmv][adgt]x[apqs][ADGKNS][acstv][G][DGKT][DEGNST][agnrst]x[ACFILTV]
Conservation:0.065-0.3890.260-0.645-0.292-1.204-0.1860.159-0.2013.3090.393-0.035-0.682-0.258-0.294
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a5t_*_261a5t   -2741LLIQALPGMGDDALIEEEE--TTS-HHHHHbbxbbxxvavaaaaa
1ak2_*_181ak2   -1933AVLLGPPGAGKGTQAEEEE--TTSSHHHHHbbbbbxxvagaaaaa
1aky_*_61aky   -721MVLIGPPGAGKGTQAEEEE--TTSSHHHHHbbbbbxpvagaaaaa
1dar_*_121dar   -1529IGIAAHIDAGKTTTTEEEEE-TTS-HHHHHbbbxbxpvagaaaaa
1e79_D_1511e79   D152166IGLFGGAGVGKTVLIEEEEESTTSSHHHHHbbbxbxxvagaaaaa
1g29_1_311g29   13246MILLGPSGCGKTTTLEEEE-STTSSHHHHHxbbbbwxvavaaaaa
1j99_A_371j99   A3751VIILTYPKSGTNWLAEEEE-STTSSHHHHHbbxbbxpvagaaaaa
1jbk_A_2011jbk   A202216PVLIGEPGVGKTAIVEEEE--TTS-HHHHHxbxbbxpvavaaaaa
1jwy_B_271jwy   B2842IVVVGSQSSGKSSVLEEEEE-SSSSHHHHHbbxbbxplagaaaaa
1khb_A_2771khb   A280294LAAAFPSACGKTNLAEEEE--TTS-HHHHHbbbbbxpUagaaaaa
1np6_A_91np6   A1024LAFAAWSGTGKTTLLEEEE--TTS-HHHHHbxbbbxpvavaaaaa
1pjr_*_271pjr   -2741LLIMAGAGSGKTRVLEEEEE-TTS-HHHHHbbbxxxpvavaaaaa
1qde_A_611qde   A6175VLAQAQSGTGKTGTFEEEE--TTSSHHHHHbbbxbxxvavaaaaa
1qhx_A_51qhx   A620IILNGGSSAGKSGIVEEEE--TTSSHHHHHbbxbbxxvagaaaaa
1so8_A_361so8   A3751AVLLDLPNSGGEAQAEEEEE-TTSSHHHHHbbxxbxxvavaaaaa
3adk_*_103adk   -1125IFVVGGPGSGKGTQCEEEEE-TTSSHHHHHbxbbbxxvavaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a5t_*_261a5t   *     ZNZINC ION R - 46
1aky_*_61aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 11
1aky_*_61aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE P - 12
1aky_*_61aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE P - 13
1aky_*_61aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 14
1aky_*_61aky   *     IMDIMIDAZOLE G - 14
1aky_*_61aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 15
1aky_*_61aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 16
1aky_*_61aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE K - 17
1aky_*_61aky   *     IMDIMIDAZOLE K - 17
1aky_*_61aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 18
1aky_*_61aky   *     IMDIMIDAZOLE G - 18
1aky_*_61aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE T - 19
1aky_*_61aky   *     IMDIMIDAZOLE T - 19
1aky_*_61aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE Q - 20
1aky_*_61aky   *     IMDIMIDAZOLE A - 21
1dar_*_121dar   *     GDPGUANOSINE-5'-DIPHOSPHATE A - 19
1dar_*_121dar   *     GDPGUANOSINE-5'-DIPHOSPHATE H - 20
1dar_*_121dar   *     GDPGUANOSINE-5'-DIPHOSPHATE I - 21
1dar_*_121dar   *     GDPGUANOSINE-5'-DIPHOSPHATE D - 22
1dar_*_121dar   *     GDPGUANOSINE-5'-DIPHOSPHATE A - 23
1dar_*_121dar   *     GDPGUANOSINE-5'-DIPHOSPHATE G - 24
1dar_*_121dar   *     GDPGUANOSINE-5'-DIPHOSPHATE K - 25
1dar_*_121dar   *     GDPGUANOSINE-5'-DIPHOSPHATE T - 26
1dar_*_121dar   *     GDPGUANOSINE-5'-DIPHOSPHATE T - 27
1dar_*_121dar   *     GDPGUANOSINE-5'-DIPHOSPHATE T - 28
1e79_D_1511e79   D     ADPADENOSINE-5'-DIPHOSPHATE G - 156
1e79_D_1511e79   D     ADPADENOSINE-5'-DIPHOSPHATE G - 157
1e79_D_1511e79   D     ADPADENOSINE-5'-DIPHOSPHATE A - 158
1e79_D_1511e79   D     ADPADENOSINE-5'-DIPHOSPHATE G - 159
1e79_D_1511e79   D     ADPADENOSINE-5'-DIPHOSPHATE V - 160
1e79_D_1511e79   D     ADPADENOSINE-5'-DIPHOSPHATE G - 161
1e79_D_1511e79   D     MGMAGNESIUM ION K - 162
1e79_D_1511e79   D     ADPADENOSINE-5'-DIPHOSPHATE K - 162
1e79_D_1511e79   D     MGMAGNESIUM ION T - 163
1e79_D_1511e79   D     ADPADENOSINE-5'-DIPHOSPHATE T - 163
1e79_D_1511e79   D     GLHN-5-CYCLOHEXYL-N-5-[(CYCLOHEXYLAMINO)CARBONYL]GLUTAMINE T - 163
1e79_D_1511e79   D     ADPADENOSINE-5'-DIPHOSPHATE V - 164
1e79_D_1511e79   D     GLHN-5-CYCLOHEXYL-N-5-[(CYCLOHEXYLAMINO)CARBONYL]GLUTAMINE V - 164
1e79_D_1511e79   D     ADPADENOSINE-5'-DIPHOSPHATE L - 165
1e79_D_1511e79   D     GLHN-5-CYCLOHEXYL-N-5-[(CYCLOHEXYLAMINO)CARBONYL]GLUTAMINE M - 167
1e79_D_1511e79   D     GLHN-5-CYCLOHEXYL-N-5-[(CYCLOHEXYLAMINO)CARBONYL]GLUTAMINE E - 168
1e79_D_1511e79   D     GLHN-5-CYCLOHEXYL-N-5-[(CYCLOHEXYLAMINO)CARBONYL]GLUTAMINE N - 171
1g29_1_311g29   1     POPPYROPHOSPHATE 2- G - 36
1g29_1_311g29   1     POPPYROPHOSPHATE 2- P - 37
1g29_1_311g29   1     POPPYROPHOSPHATE 2- S - 38
1g29_1_311g29   1     POPPYROPHOSPHATE 2- G - 39
1g29_1_311g29   1     POPPYROPHOSPHATE 2- C - 40
1g29_1_311g29   1     POPPYROPHOSPHATE 2- G - 41
1g29_1_311g29   1     POPPYROPHOSPHATE 2- K - 42
1g29_1_311g29   1     POPPYROPHOSPHATE 2- T - 43
1g29_1_311g29   1     POPPYROPHOSPHATE 2- T - 44
1g29_1_311g29   1     POPPYROPHOSPHATE 2- T - 45
1j99_A_371j99   A     IODIODIDE ION P - 43
1j99_A_371j99   A     AND3-BETA-HYDROXY-5-ANDROSTEN-17-ONE P - 43
1j99_A_371j99   A     IODIODIDE ION K - 44
1j99_A_371j99   A     AND3-BETA-HYDROXY-5-ANDROSTEN-17-ONE K - 44
1j99_A_371j99   A     IODIODIDE ION S - 45
1j99_A_371j99   A     IODIODIDE ION G - 46
1j99_A_371j99   A     IODIODIDE ION T - 47
1j99_A_371j99   A     AND3-BETA-HYDROXY-5-ANDROSTEN-17-ONE T - 47
1j99_A_371j99   A     IODIODIDE ION N - 48
1j99_A_371j99   A     HGIMERCURY (II) IODIDE L - 54
1j99_A_371j99   A     HGIMERCURY (II) IODIDE C - 55
1j99_A_371j99   A     HGIMERCURY (II) IODIDE L - 56
1j99_A_371j99   A     HGIMERCURY (II) IODIDE H - 58
1jbk_A_2011jbk   A     MGMAGNESIUM ION E - 207
1jbk_A_2011jbk   A     MGMAGNESIUM ION P - 208
1jbk_A_2011jbk   A     MGMAGNESIUM ION G - 209
1jbk_A_2011jbk   A     MGMAGNESIUM ION V - 210
1jbk_A_2011jbk   A     MGMAGNESIUM ION G - 211
1jbk_A_2011jbk   A     MGMAGNESIUM ION K - 212
1jbk_A_2011jbk   A     MGMAGNESIUM ION T - 213
1jwy_B_271jwy   B     MGMAGNESIUM ION K - 38
1jwy_B_271jwy   B     MGMAGNESIUM ION S - 39
1jwy_B_271jwy   B     MGMAGNESIUM ION L - 42
1khb_A_2771khb   A     GTOPHOSPHOMETHYLPHOSPHONIC ACID-GUANYLATE ESTER F - 284
1khb_A_2771khb   A     GTOPHOSPHOMETHYLPHOSPHONIC ACID-GUANYLATE ESTER P - 285
1khb_A_2771khb   A     MNMANGANESE (II) ION S - 286
1khb_A_2771khb   A     GTOPHOSPHOMETHYLPHOSPHONIC ACID-GUANYLATE ESTER S - 286
1khb_A_2771khb   A     GTOPHOSPHOMETHYLPHOSPHONIC ACID-GUANYLATE ESTER A - 287
1khb_A_2771khb   A     GTOPHOSPHOMETHYLPHOSPHONIC ACID-GUANYLATE ESTER C - 288
1khb_A_2771khb   A     GTOPHOSPHOMETHYLPHOSPHONIC ACID-GUANYLATE ESTER G - 289
1khb_A_2771khb   A     MNMANGANESE (II) ION K - 290
1khb_A_2771khb   A     GTOPHOSPHOMETHYLPHOSPHONIC ACID-GUANYLATE ESTER K - 290
1khb_A_2771khb   A     MNMANGANESE (II) ION T - 291
1khb_A_2771khb   A     GTOPHOSPHOMETHYLPHOSPHONIC ACID-GUANYLATE ESTER T - 291
1khb_A_2771khb   A     GTOPHOSPHOMETHYLPHOSPHONIC ACID-GUANYLATE ESTER N - 292
1khb_A_2771khb   A     GTOPHOSPHOMETHYLPHOSPHONIC ACID-GUANYLATE ESTER L - 293
1qhx_A_51qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 10
1qhx_A_51qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 11
1qhx_A_51qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 12
1qhx_A_51qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 13
1qhx_A_51qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 14
1qhx_A_51qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 15
1qhx_A_51qhx   A     MGMAGNESIUM ION K - 16
1qhx_A_51qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 16
1qhx_A_51qhx   A     MGMAGNESIUM ION S - 17
1qhx_A_51qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 17
1qhx_A_51qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 18
1qhx_A_51qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE I - 19
1qhx_A_51qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE R - 21
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e79_D_1511e79   D AT4ADP BINDING SITE FOR CHAIN DG - 159
1e79_D_1511e79   D AT4ADP BINDING SITE FOR CHAIN DG - 161
1e79_D_1511e79   D PLPLYSINE WITHIN THE P-LOOP (PHOSPHATE BINDING) MOTIF, GXXXXGKT/S.K - 162

Clusters included in this Subclass
CLUSTER: EH.4.139
CLUSTER: EH.5.47
CLUSTER: EH.6.258
CLUSTER: EH.7.19